Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00143 | ATGATGGATCCTTACCACCACCACCACCACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCGTTACCTTACCGGAACCACCGCTGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACTCTTACTGCTCACCAGGATCTCAAAGGAATGAGGTTGGGTAGTGTGTACTATGAGCCATTGATGGCATCTTCCAGCCACAAAATTACTTCTAGACAGCGATGGACTCCGTTGCCCGTGCAACTTCAGATCTTGGAGCGTATATTCGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAGATTACCTCTGAACTGGGTCAACATGGGCAAATTTCTGAATCAAATGTCTATAATTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAGGGTACAGCGCCTACGTATGGTGAATCAGAATTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACAAAACCTGTGGATTTTCAAACTCCTCAAACCTCTGCACCTTTGGGGGAGGACATGGGCTTCCAGAGTCCTGAGATGCACTATGAACTGCATTTCCTGGATCCAAATACCAACAAAGCTGATACTTTGTTTCCATCAAATGGAAGTTCAAAAACCGCAAGAACTTTTAGTCAGATGTCTTCTTATGAAGCAGGGAATGAACAGCTGACAGGAAAGATCGAGACACCAGAAAACTATAGTCTTTACTCGCAAGCAGAAGGATGCATGGCCGAACAACCCTGA | 828 | 46.98 | MMDPYHHHHHHHQNPPLRDDHLRYLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLKGMRLGSVYYEPLMASSSHKITSRQRWTPLPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQGTAPTYGESELETEVESPKDKKTKPVDFQTPQTSAPLGEDMGFQSPEMHYELHFLDPNTNKADTLFPSNGSSKTARTFSQMSSYEAGNEQLTGKIETPENYSLYSQAEGCMAEQP | 275 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 768695 | 771401 | - | CmoCh06G001430.1 | Cmo06g00143 | 383705 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00143 | 275 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 26 | 269 | IPR044559 | GO:0003700 | |
| Cmo06g00143 | 275 | PANTHER | - | 26 | 269 | - | - | |
| Cmo06g00143 | 275 | SMART | HOX_1 | 95 | 162 | IPR001356 | GO:0003677 | |
| Cmo06g00143 | 275 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cmo06g00143 | 275 | Gene3D | - | 97 | 163 | - | - | |
| Cmo06g00143 | 275 | MobiDBLite | consensus disorder prediction | 153 | 196 | - | - | |
| Cmo06g00143 | 275 | MobiDBLite | consensus disorder prediction | 172 | 186 | - | - | |
| Cmo06g00143 | 275 | CDD | homeodomain | 97 | 159 | IPR001356 | GO:0003677 | |
| Cmo06g00143 | 275 | ProSiteProfiles | 'Homeobox' domain profile. | 93 | 158 | IPR001356 | GO:0003677 | |
| Cmo06g00143 | 275 | Pfam | Homeodomain | 97 | 157 | IPR001356 | GO:0003677 | |
| Cmo06g00143 | 275 | SUPERFAMILY | Homeodomain-like | 95 | 160 | IPR009057 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00143 | Cmo-Chr6:768695 | Cmo09g00049 | Cmo-Chr9:208487 | 7.30E-67 | dispersed | |
| Cmo16g01322 | Cmo-Chr16:9380247 | Cmo06g00143 | Cmo-Chr6:768695 | 1.25E-174 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9899 | PF00046 | Homeodomain | 2.00E-17 | CL0123 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00143 | - | - | csv:101203410 | 474.167 |