Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00159 ATGACTCGCTACTTCCAAGCTTTGGCCGGGAATACTTCCTCGGCGACGGCGACAGCGACGGCGCCGCCCCCAGAGGCGGTGGCTATGGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTACTGTGTGCTCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGGCGTGGCAGTAACGGTGGCGGTGCAGGAAATCAGGCGTCAGCGAACAGGGGATTGAAGAAGAAAATCCTGCAATCCCTCCCGAAATTCGCGTACAGAGCATCGGGGTCGGGCGGAGAAGAGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCCTAGACGGGGAGGAGATCCGACAACTGCCGCAGTGTGGCCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTGAGCTCCCACTCGTCCTGCCCCTCTTGCCGCCAGATTCTGGTAGTCGCCAGATGCCAGAAGTGCGGCGAGTTCCCGGCCGTCGTCCACGGCGGCGATCACAACGACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAACGGTAACAACAGAGGTTTGGGATTTTTGCCTTGA 585 59.83 MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNDEEEQKRREDNNGNNRGLGFLP 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 852721 853305 + CmoCh06G001590.1 Cmo06g00159 383721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00159 194 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Cmo06g00159 194 SMART FANCL_C_2 102 156 - -
Cmo06g00159 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 180 - -
Cmo06g00159 194 SMART ring_2 106 147 IPR001841 -
Cmo06g00159 194 MobiDBLite consensus disorder prediction 170 185 - -
Cmo06g00159 194 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Cmo06g00159 194 MobiDBLite consensus disorder prediction 170 194 - -
Cmo06g00159 194 Pfam Ring finger domain 105 148 IPR001841 -
Cmo06g00159 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Cmo06g00159 194 SUPERFAMILY RING/U-box 86 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00159 Cmo-Chr6:852721 Cmo15g00179 Cmo-Chr15:820052 7.90E-34 dispersed
Cmo13g00922 Cmo-Chr13:8143395 Cmo06g00159 Cmo-Chr6:852721 1.32E-13 dispersed
Cmo14g00149 Cmo-Chr14:652023 Cmo06g00159 Cmo-Chr6:852721 1.71E-18 dispersed
Cmo17g00673 Cmo-Chr17:6899493 Cmo06g00159 Cmo-Chr6:852721 9.23E-23 dispersed
Cmo18g00124 Cmo-Chr18:879086 Cmo06g00159 Cmo-Chr6:852721 1.09E-12 dispersed
Cmo06g00159 Cmo-Chr6:852721 Cmo09g00034 Cmo-Chr9:149396 3.54E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00159 - - cmos:111440980 364.385