Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00165 ATGACCTTTGACATGGCTCAGAGTGCTAGGACAATGAGTTCTTCCTTTAACTCCAGCAGTGGCAACGATGATGCTCTTCTTCAAAGCTTTGCTGCTGCTTCAAATGGGGATGATTATGATAGCGATGGCTCCAACTTTGCACCCCCTACTCCTACAACCATATCGATGGCAATTCCAGCCGAACTTGCTGGGGTCATACCTTTGATTGATAGATTCCAGGTCGAAGGATTCTTAAGGATGATGCATAAACAGATACATTCTTCTGGAAAACGTGGATTCTTTTCCAAACGATCTGTAGGTCCTCAAGTTCGGGACAAATTCACATTTGAAGATATGTTGTGTTTCCAAAAGGATCCAATACCAACTTCATTACTTAAAATTAACTCTGACTTGGTGAGCCGAGCCATTAAACTATTCCAAATAATCTTGAAGTACATGGGTGTCGACTCATCTGATAGAGTTAATGCAATAAGCTTAGATGAACGAATTGAGCTCGTTGGAAAACTATACAAGCAAACTTTGAAACGTTCAGAGCTTCGAGATGAACTTTTTATCCAAATCTCAAAGCAAACTAGAAATTCTCCCGATTGGCAATATTTGATCAAAGCATGGGAGCTGATGTATCTATGTGCATCTGCCATGCCTCCTAGCAAGGATATTGGTGGATATCTTTCAGAGTATGTTCATACTGTTGCACAAGGCAGTAGTACTGATTCAGAGGTTCGAGTTTTTGCATTAAATACACTGAATGCTTTAAAGCGTTGCATGAAGGCGGGTCCCAGGCATATAATACCTGGTCGTGAGGAAATTGAAGCTCTTTTAACAGGGCGAAAGCTTACAACCATAGTGTTTTTCTTGGATGAAACTTTTGAAGAAATCACATACGATATGACAACAACAGTGGCTGATTCTGTTGAGGAACTTTCAGGAATTATAAAACTGTCAGTACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGATTGTCAGTGGGGCTAAAGCACTTGATCTCGGAAATGAGGAGTATGTTGGGCTTGATGATAACAAATATATTGGAGATCTGTTAGCAGAATTCAAGGCAGCAAAAGATCGAAGTAAAGGAGAAATTCTGCACTTCAAGCTGACATTTAAAAAGAAGCTGTTTCGGGAGTCTGATGAAGCTGTTGCAGACCCAATGTTTATACAGCTATCATATGTTCAGCTTCAGCATGACTATTTGTTGGGGAATTATCCTGTTGGAAGGGATGATGCTGCTCAGCTGTCAGCATTACAGATCCTGGTTGAAATTGGGTTTATTAGCAGTCCAGAATCTTGCACTGATTGGAATTCGCTTCTGGAAAGATTTGTTCCCCGACAAATTGCCATAACGAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTATCGTTCCATGGAGCATCTGACAAAAGATGATGCAAGACAACAATTTCTTCGGATATTGAGATCGCTTCCCTACGGGAATTCAGTTTTCTTTGGCATCCGCAAGATTGATGATCCCATTGGACTTCTACCTGGGCGAATAATTTTGGGTATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCGAAGGAGTATTTACATTCTGCTGAATTAAGAGATATAATGCAGTTCGGCAGCAGTAACACTGCTGTCTTTTTTAAGATGAGAGTTGCTGGTGTCCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTCTGCAGACACACATAAACGATGTCATGTTGCGTCGTTACTCTAAAGCTAGATCTGCTGCTGTTGGCTCCATGCTTGGAGATTCTTCCAGCAATTTTAAGGCTCAAAGTGTGGAAGCATATGAGAAACGAGTTCATGAGTTGAGTAAGGGCATTGAAGAGTCTCAGAGAAATTCTGAACAGTTGCTGAAGGAATTGCATGAAAAGAATAAGCAAGAAGTGGTATTGCAAGAAGAAATGGAGACCTTAAAAGAATCCTTGAGATTTGAAAGGCAAAACTTAGCTGAGGCAACACGTAGTCTTGAGAGGCTCAGATCGCAGTATGATGAAAAAAACAAGGAGCACCAGGACATGTTAATGGAAAAAAGGAGTATGGAAGCAAGAATAGCCAAGTTGAGCGCCACCATACTGGAAAATAATGTGGAAAAAGATGCGGTCGGAATTAATGAACAGGTTCTACAAAAACTTCAAGATGAGTTGAGCCTTCGAAATGATGAGTTGCAAGCCACTGAAGAAATCAGAAAGAAACTGGTAAATGAAAAACTATTACTGGAACAAAGAATATTTGGACTTGAAATGACAACTAGCGACGAGATGGAACATCTTAAGAAAGGCTTTGAACATGAACGCAAAGTCTTGAAGCTGAGAGTGGCAGAACTTGAGAAGAAGCTTGAAGAAGTAACTCGAGAACTAGCTGTCATGGAGTCAACTCTTGCGATCAGGAACTCTGATTTGGCAGCACTGCAAAATAATTTAAAGGAACTAGAGGAACTACGAGAGATGAAAGAGGACATTGACCGAAAAAATGAGCAAACAGCTAATATTTTGAAGATGCAAGGAGCTCAGCTAGCTGAGATGGAAGCGCTTTATAAGGAAGAGCAAATTTTAAGGAAACGCTATTTCAACATGATAGAAGATATGAAAGGAAAAATTCGAGTTTACTGTCGACTTAGACCTCTTAATGAGAAAGAAATCATTGAAAAAGAAAAGAACGTGCTTAGAAGTCTGGACGAGTTCACAGTTGAACATTCGTGGAAAGATGATAAGCCGAAGCAACATATGTATGATCGTGTATTCGATGGCACTGTCTCCCAGGAAGACGTCTTTGAAGATACGCGGTATCTAGTCCAGTCTGCTGTTGATGGCTATAATGTCTGCATTTTTGCTTATGGTCAAACTGGTTCTGGTAAGACCTTTACAATATATGGATCTGAGGAGAACCCTGGCTTAACACCTCGTGCCATTGGCGAACTTTTTAGAATTTTGAAGCGTGATAGTAACAAGTTTTCGTTTTCATTGAAGGCATACATGGTAGAATTATATCAAGATACGTTAGTAGATCTTCTTTTGCCGAAGAATGCAAAACGATCGAGATTAGATATCAAAAAGGATACAAAGGGAATGGTATCCATTGAAAATGTCACAATAGCTTCTATCTCAACGTTTGAAGAATTGAAAAACATTATTTATAGAGGATCCGAGCAACGACATACTTCCGAGACTCAAATGAACGAAGAAAGTTCAAGATCACATTTGATACTTTCAATTATTATCGAAAGCACCAACCTTCAGACGCAATCCGTTTCTAAAGGAAAGCTTAGTTTTGTTGATCTTGCGGGGTCAGAGAGAGTGAAGAAGTCAGGCTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCAGCACTTGGGGATGTTATCAGTGCTTTGTCTTCTGGGGGTCAGCACATACCTTACAGAAATCATAAGCTAACTATGTTGATGAGCGATTCACTCGGTGGTAACGCTAAAACGCTTATGTTTGTCAACGTCTCTCCAGCTGAATCCAACTTAGACGAGACGTACAATTCTCTCATGTACGCGTCTAGAGTTCGATCGATTGTTAACGATCCAAGCCGAAACGTAGCATCGAAAGAGGTTGCTCGACTGAAAAAACTGGTTGGTTATTGGAAAGAACAAGCAGGTAGAAGGGGAGAGGTCGACGAGTTGGAAGAAATTCAAGACGAGCGACATTGTAAAGAGAAAGCGGATATCAGATATTCCATGTTCAAGTTTGGCGATTGTTCTCCTTCAAGGAGTGCAGCTCATGCGCGAAAGAAATTTGATACAGACAATGGCGAATTCAGATTTCGGAACCATGTAATTGAACGGTCAAGCGGCTACGAGAAGAAGAGGAACGGTAACGAATCGGTGGTTTTTAGGGTTTCTTTCTGGGTTGCATGTGCTGAAAAATACTGCAGAAAGATCAAATCAGCAATTTCTGTTTCTGGAGCTCGTTCTTGTTTTCCAGGAAGTTACTTCCATCTAGTGATGAGTATTGCTATGATTTTCATTTGTAGAATTCTCCCTTTGGAACCGGAGATGTGTGATGCGATGGAGGAACGGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCAATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCAATCACGACCAAGACTTGGATAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCCCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTGCATCCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAACGGGTTCTCTTGATGATGCTTCAACAGCCAGTCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATATATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAATGTTGCTACACCTCACAATGGGCATTCAAATATGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTGCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCGGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGCATTGGTGGTATTCTTAAACGCAAGAAACCGTCTTACATGGAGCATACTGTGAAATCGGCACGAACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGCGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACGCCCTTTAAAAAGGTGGTCAGCCTACCATCAAGGATTGATCCGCATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTCTGCTACACCCACCTGAAGCTGCATGTTCAAACCAAGCTTTAGTTCGATATGTTAGCCTGTTTTATAATGTTAATACCGTCAGACTGTTGAAAAAAACCATAGCCAGGGCAGGAACCATGATTTTGATTGTAAGATATTTGGTAGTGGTTAGATTAGCATCCAAGAGCTATTACTGTAATCTTATGTCAAATCCCTTTGTAATCTATGGTAGCAAGTTCATGAATCTGCTGACAAATTTAGCTTTGCCCCTTATGTATGTAGTGTTAAACTAA 5883 41.7 MTFDMAQSARTMSSSFNSSSGNDDALLQSFAAASNGDDYDSDGSNFAPPTPTTISMAIPAELAGVIPLIDRFQVEGFLRMMHKQIHSSGKRGFFSKRSVGPQVRDKFTFEDMLCFQKDPIPTSLLKINSDLVSRAIKLFQIILKYMGVDSSDRVNAISLDERIELVGKLYKQTLKRSELRDELFIQISKQTRNSPDWQYLIKAWELMYLCASAMPPSKDIGGYLSEYVHTVAQGSSTDSEVRVFALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGIIKLSVHSSFSLFECRKIVSGAKALDLGNEEYVGLDDNKYIGDLLAEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVADPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFISSPESCTDWNSLLERFVPRQIAITRPKREWELDILSRYRSMEHLTKDDARQQFLRILRSLPYGNSVFFGIRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSAAVGSMLGDSSSNFKAQSVEAYEKRVHELSKGIEESQRNSEQLLKELHEKNKQEVVLQEEMETLKESLRFERQNLAEATRSLERLRSQYDEKNKEHQDMLMEKRSMEARIAKLSATILENNVEKDAVGINEQVLQKLQDELSLRNDELQATEEIRKKLVNEKLLLEQRIFGLEMTTSDEMEHLKKGFEHERKVLKLRVAELEKKLEEVTRELAVMESTLAIRNSDLAALQNNLKELEELREMKEDIDRKNEQTANILKMQGAQLAEMEALYKEEQILRKRYFNMIEDMKGKIRVYCRLRPLNEKEIIEKEKNVLRSLDEFTVEHSWKDDKPKQHMYDRVFDGTVSQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEENPGLTPRAIGELFRILKRDSNKFSFSLKAYMVELYQDTLVDLLLPKNAKRSRLDIKKDTKGMVSIENVTIASISTFEELKNIIYRGSEQRHTSETQMNEESSRSHLILSIIIESTNLQTQSVSKGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLMYASRVRSIVNDPSRNVASKEVARLKKLVGYWKEQAGRRGEVDELEEIQDERHCKEKADIRYSMFKFGDCSPSRSAAHARKKFDTDNGEFRFRNHVIERSSGYEKKRNGNESVVFRVSFWVACAEKYCRKIKSAISVSGARSCFPGSYFHLVMSIAMIFICRILPLEPEMCDAMEERESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKINSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPNHDQDLDKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHPSLDAEAFGMPETKTGSLDDASTASHDEPVTPHPVSSYIKAETENAIELKVNEDNVATPHNGHSNMNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTACKLWRQVGESFKPPKTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFLLHPPEAACSNQALVRYVSLFYNVNTVRLLKKTIARAGTMILIVRYLVVVRLASKSYYCNLMSNPFVIYGSKFMNLLTNLALPLMYVVLN 1960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 869789 886743 - CmoCh06G001650.1 Cmo06g00165 383727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00165 1960 CDD KISc_C_terminal 887 1212 - -
Cmo06g00165 1960 Gene3D - 1213 1261 - -
Cmo06g00165 1960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1238 IPR027417 -
Cmo06g00165 1960 MobiDBLite consensus disorder prediction 1502 1534 - -
Cmo06g00165 1960 Pfam ARID/BRIGHT DNA binding domain 1587 1671 IPR001606 GO:0003677
Cmo06g00165 1960 Gene3D - 497 604 IPR011993 -
Cmo06g00165 1960 Coils Coil 617 707 - -
Cmo06g00165 1960 Gene3D MyTH4 domain 95 276 IPR038185 -
Cmo06g00165 1960 Gene3D Kinesin motor domain 876 1212 IPR036961 -
Cmo06g00165 1960 CDD ACD_sHsps_p23-like 1798 1871 - -
Cmo06g00165 1960 Gene3D - 278 382 - -
Cmo06g00165 1960 ProSiteProfiles FERM domain profile. 279 593 IPR000299 GO:0005856
Cmo06g00165 1960 PANTHER KINESIN-LIKE PROTEIN KLP-3 66 1240 - -
Cmo06g00165 1960 ProSiteProfiles ARID domain profile. 1584 1675 IPR001606 GO:0003677
Cmo06g00165 1960 ProSiteProfiles MyTH4 domain profile. 115 274 IPR000857 GO:0005856
Cmo06g00165 1960 Pfam FERM central domain 385 499 IPR019748 -
Cmo06g00165 1960 Pfam MyTH4 domain 168 272 IPR000857 GO:0005856
Cmo06g00165 1960 SUPERFAMILY PH domain-like 499 587 - -
Cmo06g00165 1960 MobiDBLite consensus disorder prediction 1455 1479 - -
Cmo06g00165 1960 Gene3D - 1777 1883 IPR008978 -
Cmo06g00165 1960 SUPERFAMILY HSP20-like chaperones 1790 1874 IPR008978 -
Cmo06g00165 1960 SUPERFAMILY Second domain of FERM 377 494 IPR035963 -
Cmo06g00165 1960 SMART bright_3 1585 1676 IPR001606 GO:0003677
Cmo06g00165 1960 Coils Coil 782 854 - -
Cmo06g00165 1960 SUPERFAMILY ARID-like 1579 1685 IPR036431 GO:0003677
Cmo06g00165 1960 MobiDBLite consensus disorder prediction 1437 1454 - -
Cmo06g00165 1960 SMART B41_5 275 499 IPR019749 -
Cmo06g00165 1960 Gene3D - 1584 1681 IPR036431 GO:0003677
Cmo06g00165 1960 PRINTS Kinesin heavy chain signature 1160 1181 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo06g00165 1960 PRINTS Kinesin heavy chain signature 1111 1129 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo06g00165 1960 PRINTS Kinesin heavy chain signature 961 982 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo06g00165 1960 PRINTS Kinesin heavy chain signature 1080 1097 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo06g00165 1960 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 1779 1893 IPR002068 -
Cmo06g00165 1960 ProSitePatterns Kinesin motor domain signature. 1110 1121 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo06g00165 1960 CDD FERM_C_KCBP 496 602 - -
Cmo06g00165 1960 CDD ARID 1589 1671 - -
Cmo06g00165 1960 SUPERFAMILY Prismane protein-like 832 916 IPR011254 GO:0003824|GO:0016491
Cmo06g00165 1960 PANTHER KINESIN-LIKE PROTEIN 66 1240 - -
Cmo06g00165 1960 ProSiteProfiles Kinesin motor domain profile. 889 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo06g00165 1960 SMART MyTH4_1 115 274 IPR000857 GO:0005856
Cmo06g00165 1960 Gene3D - 391 492 IPR014352 -
Cmo06g00165 1960 Pfam Kinesin motor domain 895 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo06g00165 1960 SMART ARID_2 1581 1671 - -
Cmo06g00165 1960 Coils Coil 732 766 - -
Cmo06g00165 1960 CDD FERM_B-lobe 394 492 IPR019748 -
Cmo06g00165 1960 MobiDBLite consensus disorder prediction 1429 1484 - -
Cmo06g00165 1960 SMART kinesin_4 887 1218 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02101 Cmo-Chr1:14542120 Cmo06g00165 Cmo-Chr6:869789 7.20E-89 dispersed
Cmo06g00165 Cmo-Chr6:869789 Cmo05g01148 Cmo-Chr5:9108426 8.17E-81 dispersed
Cmo17g00098 Cmo-Chr17:534796 Cmo06g00165 Cmo-Chr6:869789 1.35E-06 dispersed
Cmo16g01343 Cmo-Chr16:9472037 Cmo06g00165 Cmo-Chr6:869789 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9902 PF00225 Kinesin 1.20E-104 CL0023 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00165 - - csv:101206704 2235.68