Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00168 | ATGTCGGCTGTGCTAACGCTGCTACTTGTGGCTTTCTTCTACGCCGGAATTGATACCACCATTTCCCTTACTCATTTCGGCGATTCTGCGGCACTGGTGTCCCTGAAAAACGAATGGCAAAACACACCACCAAGCTGGGGAACATCAAATGATCCGTGTGGAACTCCCTGGGAAGGAGTGCTTTGCAACAATTCAAGAGTCACTGCACTGAGATTATCAGCTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGTCTGAACTAAAATCATTGGACCTTTCGTTCAATACAGATCTCACTGGTTCGATCTCTCCGGCAATAGGGAAACTACAGAATTTGAATATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATTCCTGAAGAACTGGGCAATCTTTCTAAGCTATCCTTCTTGGCGTTAAACTCTAACAAGTTCACCGGTACCATACCGCCATCTCTGGGAAAACTCTCCGAACTCTATTGGCTGGACCTAGCAAGTAATCAATTAACAGGCAGTATTCCTGTCTCAACTTCTGAATCTCCCGGTTTGGACCTCCTTCTGAAAGCTAAACATTTTCATTTCAACAAAAACCAGTTATCGGGTTCCATTTCGCCTAAACTTTTTAGATCTGAAATGGTGTTAATACACATATTATTTGATGGAAATAGTCTTTCTGGGAGTATCCCTCCAACTTTGGGACTTGTAAAGACCCTTGAGGTTCTTCGACTCGATCGAAATTCTCTAACAGGACCAGTCCCATCAAATCTGAACAACCTAACAAATGTCGATGAATTGAATTTAGCCAACAATAAGTTGACTGGTCCAATGCCAAACTTAACTGATATGTACTCACTAAATTATGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCGGAATGGTTCTCAAATCTACAATCGCTCACCACTCTGGTTGTTGAACATGGTTCAATACAGGGATCTGTGCCACAAGCAGTCTTTAGCTTACCACAAATACAGCAAATAAAACTGAAGAACAATTCATTCAATGGGACATTAAGTATGGGTGACACAATTAGCCCACAGTTGCAGCTTGTTGATCTGCAAAGTAACGGTATTTCCGAGTTTACCTTTGGTTCAGAATATTCCAGAACTTTGATGCTGACAGGGAATCCTGTGTGTACCACTGATAACACCCTCTCAAATACGAAATATTGCCAGCTTCGAGATCATACGACACAACCCTATTCCACCAGCCTTTTGTACTGTGGAAGTAAGTTGTGTCCTCCTGCTGAGAGGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTTCAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCGAACGTGACGTTGTTTCACTTATTGGAATCGAGTCTTTGGACCAAACTGGAGCTGACGACTGGTTCAGTTTTTATTCAAAACCCTTTCTTTAATGTTGACGATTATCTTCAGATGGAGCTTGCTCTTTTTCCGCCCAACGGGAAGTATTTTAATAGGTCGGATATTCAGAGGATTGGGTTTGCCTTGAGTAATCAAACTTACAAACCTCCCAAAGCATTTGGGCCATTTTATTTCATTGCATCCCCCTATGGTTTTCCAGACAATGCAAGGCGAACTGAAGTCAGCTCTGTAGTGATAATTGGAGTAGCTATTGGTTGTGCCATTCTCGTTCTAGGACTCATTGGAGTTGGAATATACGCGATTCGCCAAAAGAAACGTGCAGAAAAGGCCATCGTATTGAGTCGGCCATTCGCTTCTTGGGCACCAAGTGGAGACGATAGTGGAGGTGCTCCACAGTTGAAGGGAGCTAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAGTTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATATAGAGGAGTGCTCGTGGATGGACAAGTAGTTGCGATCAAACGAGCTCAACAAGGATCAAGGCAGGGTGGCATCGAGTTCAAGACAGAAATCGAACTGCTTTCACGAGTTCATCACAAAAACCTTCTTGGCCTCATCGGATTTTGTTTCGAACAAGAAGAGCAGATGCTTGTTTATGAATTCATGCCTAATGGAACATTAAGAGATAGCCTATCTGGAAAATCTGGTATTATTCTTGATTGGAAGAGACGACTTCGTATTGCACTTGGGTCGGCCAGAGGATTGACTTACTTACACGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAATCGACCAACATTCTTTTGGACGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTCGTCTTAGACAGTCAAAAGGGGCACGTTTCTACTCAAGTTAAAGGAACACTGGGCTATTTAGATCCTGAATATTACATGACTCAACAATTGTCTGAGAAAAGTGATGTATATAGCTTCGGAGTCGTTATGTTGGAATTGTTAACCGCTAAGCTGCCTATTCAAAAAGGAAAGTACGTAGTTCGTGAGGTGCGTACGTTGATGAACAAAAATGAAGAAGAGTATTACGGTCTGAAGCAGATCCTGGATGCCGCCATCCTAAACAACACCACGGCTATTACCGGGCTTGGAAAGTTCTTGGAGTTGGCTATGCAATGCGTTGAAGAGTCAGCTGCAGAGCGCCCCACAATGAGCGAAGTGGGTAAGGCAATTGAGAGTATTTTGCAGAGTGATGGAATAGATACAAACGCGACAACTCCATCCACATCTGCTACTGAGTTTGGGGCTTCCAAAACTGCTCCTACGCATCCCTATAATGATCCTATAGCAAAGGACACTGATGACAGTAAGGCTTTTGATTACAGTGGAGGACACACTCTTCCAACAAATGTGGAACCCAAATAG | 2898 | 42.96 | MSAVLTLLLVAFFYAGIDTTISLTHFGDSAALVSLKNEWQNTPPSWGTSNDPCGTPWEGVLCNNSRVTALRLSAMGLKGKLGGDIGGLSELKSLDLSFNTDLTGSISPAIGKLQNLNILILAGCGFSGNIPEELGNLSKLSFLALNSNKFTGTIPPSLGKLSELYWLDLASNQLTGSIPVSTSESPGLDLLLKAKHFHFNKNQLSGSISPKLFRSEMVLIHILFDGNSLSGSIPPTLGLVKTLEVLRLDRNSLTGPVPSNLNNLTNVDELNLANNKLTGPMPNLTDMYSLNYVDLSNNSFDSSAAPEWFSNLQSLTTLVVEHGSIQGSVPQAVFSLPQIQQIKLKNNSFNGTLSMGDTISPQLQLVDLQSNGISEFTFGSEYSRTLMLTGNPVCTTDNTLSNTKYCQLRDHTTQPYSTSLLYCGSKLCPPAERLNPQSCECAFPFQGTLYFRAPSFRELSNVTLFHLLESSLWTKLELTTGSVFIQNPFFNVDDYLQMELALFPPNGKYFNRSDIQRIGFALSNQTYKPPKAFGPFYFIASPYGFPDNARRTEVSSVVIIGVAIGCAILVLGLIGVGIYAIRQKKRAEKAIVLSRPFASWAPSGDDSGGAPQLKGARWFSYDELKKCTNSFSMSNEIGSGGYGKVYRGVLVDGQVVAIKRAQQGSRQGGIEFKTEIELLSRVHHKNLLGLIGFCFEQEEQMLVYEFMPNGTLRDSLSGKSGIILDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVLDSQKGHVSTQVKGTLGYLDPEYYMTQQLSEKSDVYSFGVVMLELLTAKLPIQKGKYVVREVRTLMNKNEEEYYGLKQILDAAILNNTTAITGLGKFLELAMQCVEESAAERPTMSEVGKAIESILQSDGIDTNATTPSTSATEFGASKTAPTHPYNDPIAKDTDDSKAFDYSGGHTLPTNVEPK | 965 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 914044 | 920047 | - | CmoCh06G001680.1 | Cmo06g00168 | 383730 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00168 | 965 | Gene3D | Phosphorylase Kinase; domain 1 | 605 | 706 | - | - | |
Cmo06g00168 | 965 | Pfam | Leucine rich repeat N-terminal domain | 28 | 63 | IPR013210 | - | |
Cmo06g00168 | 965 | Pfam | Protein tyrosine and serine/threonine kinase | 633 | 899 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo06g00168 | 965 | SMART | serkin_6 | 631 | 906 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00168 | 965 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 1 | 938 | - | - | |
Cmo06g00168 | 965 | Gene3D | Ribonuclease Inhibitor | 284 | 419 | IPR032675 | - | |
Cmo06g00168 | 965 | PANTHER | LRR RECEPTOR-LIKE KINASE | 1 | 938 | - | - | |
Cmo06g00168 | 965 | MobiDBLite | consensus disorder prediction | 909 | 965 | - | - | |
Cmo06g00168 | 965 | Gene3D | Transferase(Phosphotransferase) domain 1 | 707 | 923 | - | - | |
Cmo06g00168 | 965 | Gene3D | Ribonuclease Inhibitor | 27 | 183 | IPR032675 | - | |
Cmo06g00168 | 965 | Gene3D | Ribonuclease Inhibitor | 184 | 283 | IPR032675 | - | |
Cmo06g00168 | 965 | CDD | STKc_IRAK | 637 | 905 | - | - | |
Cmo06g00168 | 965 | Pfam | Leucine rich repeat | 289 | 348 | IPR001611 | GO:0005515 | |
Cmo06g00168 | 965 | MobiDBLite | consensus disorder prediction | 909 | 930 | - | - | |
Cmo06g00168 | 965 | SUPERFAMILY | Protein kinase-like (PK-like) | 616 | 910 | IPR011009 | - | |
Cmo06g00168 | 965 | ProSiteProfiles | Protein kinase domain profile. | 631 | 906 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00168 | 965 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 751 | 763 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g00168 | 965 | ProSitePatterns | Protein kinases ATP-binding region signature. | 637 | 659 | IPR017441 | GO:0005524 | |
Cmo06g00168 | 965 | SUPERFAMILY | L domain-like | 36 | 423 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00168 | Cmo-Chr6:914044 | Cmo13g00001 | Cmo-Chr13:22044 | 3.21E-161 | dispersed | |
Cmo14g01155 | Cmo-Chr14:9107560 | Cmo06g00168 | Cmo-Chr6:914044 | 0 | transposed | |
Cmo20g01028 | Cmo-Chr20:8825713 | Cmo06g00168 | Cmo-Chr6:914044 | 0 | transposed | |
Cmo14g00001 | Cmo-Chr14:550 | Cmo06g00168 | Cmo-Chr6:914044 | 5.88E-57 | wgd | |
Cmo03g00291 | Cmo-Chr3:4131651 | Cmo06g00168 | Cmo-Chr6:914044 | 4.53E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74384 | PF07714 | PK_Tyr_Ser-Thr | 1.90E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00168 | - | - | csv:101220026 | 1606.27 |