Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00168 ATGTCGGCTGTGCTAACGCTGCTACTTGTGGCTTTCTTCTACGCCGGAATTGATACCACCATTTCCCTTACTCATTTCGGCGATTCTGCGGCACTGGTGTCCCTGAAAAACGAATGGCAAAACACACCACCAAGCTGGGGAACATCAAATGATCCGTGTGGAACTCCCTGGGAAGGAGTGCTTTGCAACAATTCAAGAGTCACTGCACTGAGATTATCAGCTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGTCTGAACTAAAATCATTGGACCTTTCGTTCAATACAGATCTCACTGGTTCGATCTCTCCGGCAATAGGGAAACTACAGAATTTGAATATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATTCCTGAAGAACTGGGCAATCTTTCTAAGCTATCCTTCTTGGCGTTAAACTCTAACAAGTTCACCGGTACCATACCGCCATCTCTGGGAAAACTCTCCGAACTCTATTGGCTGGACCTAGCAAGTAATCAATTAACAGGCAGTATTCCTGTCTCAACTTCTGAATCTCCCGGTTTGGACCTCCTTCTGAAAGCTAAACATTTTCATTTCAACAAAAACCAGTTATCGGGTTCCATTTCGCCTAAACTTTTTAGATCTGAAATGGTGTTAATACACATATTATTTGATGGAAATAGTCTTTCTGGGAGTATCCCTCCAACTTTGGGACTTGTAAAGACCCTTGAGGTTCTTCGACTCGATCGAAATTCTCTAACAGGACCAGTCCCATCAAATCTGAACAACCTAACAAATGTCGATGAATTGAATTTAGCCAACAATAAGTTGACTGGTCCAATGCCAAACTTAACTGATATGTACTCACTAAATTATGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCGGAATGGTTCTCAAATCTACAATCGCTCACCACTCTGGTTGTTGAACATGGTTCAATACAGGGATCTGTGCCACAAGCAGTCTTTAGCTTACCACAAATACAGCAAATAAAACTGAAGAACAATTCATTCAATGGGACATTAAGTATGGGTGACACAATTAGCCCACAGTTGCAGCTTGTTGATCTGCAAAGTAACGGTATTTCCGAGTTTACCTTTGGTTCAGAATATTCCAGAACTTTGATGCTGACAGGGAATCCTGTGTGTACCACTGATAACACCCTCTCAAATACGAAATATTGCCAGCTTCGAGATCATACGACACAACCCTATTCCACCAGCCTTTTGTACTGTGGAAGTAAGTTGTGTCCTCCTGCTGAGAGGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTTCAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCGAACGTGACGTTGTTTCACTTATTGGAATCGAGTCTTTGGACCAAACTGGAGCTGACGACTGGTTCAGTTTTTATTCAAAACCCTTTCTTTAATGTTGACGATTATCTTCAGATGGAGCTTGCTCTTTTTCCGCCCAACGGGAAGTATTTTAATAGGTCGGATATTCAGAGGATTGGGTTTGCCTTGAGTAATCAAACTTACAAACCTCCCAAAGCATTTGGGCCATTTTATTTCATTGCATCCCCCTATGGTTTTCCAGACAATGCAAGGCGAACTGAAGTCAGCTCTGTAGTGATAATTGGAGTAGCTATTGGTTGTGCCATTCTCGTTCTAGGACTCATTGGAGTTGGAATATACGCGATTCGCCAAAAGAAACGTGCAGAAAAGGCCATCGTATTGAGTCGGCCATTCGCTTCTTGGGCACCAAGTGGAGACGATAGTGGAGGTGCTCCACAGTTGAAGGGAGCTAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAGTTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATATAGAGGAGTGCTCGTGGATGGACAAGTAGTTGCGATCAAACGAGCTCAACAAGGATCAAGGCAGGGTGGCATCGAGTTCAAGACAGAAATCGAACTGCTTTCACGAGTTCATCACAAAAACCTTCTTGGCCTCATCGGATTTTGTTTCGAACAAGAAGAGCAGATGCTTGTTTATGAATTCATGCCTAATGGAACATTAAGAGATAGCCTATCTGGAAAATCTGGTATTATTCTTGATTGGAAGAGACGACTTCGTATTGCACTTGGGTCGGCCAGAGGATTGACTTACTTACACGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAATCGACCAACATTCTTTTGGACGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTCGTCTTAGACAGTCAAAAGGGGCACGTTTCTACTCAAGTTAAAGGAACACTGGGCTATTTAGATCCTGAATATTACATGACTCAACAATTGTCTGAGAAAAGTGATGTATATAGCTTCGGAGTCGTTATGTTGGAATTGTTAACCGCTAAGCTGCCTATTCAAAAAGGAAAGTACGTAGTTCGTGAGGTGCGTACGTTGATGAACAAAAATGAAGAAGAGTATTACGGTCTGAAGCAGATCCTGGATGCCGCCATCCTAAACAACACCACGGCTATTACCGGGCTTGGAAAGTTCTTGGAGTTGGCTATGCAATGCGTTGAAGAGTCAGCTGCAGAGCGCCCCACAATGAGCGAAGTGGGTAAGGCAATTGAGAGTATTTTGCAGAGTGATGGAATAGATACAAACGCGACAACTCCATCCACATCTGCTACTGAGTTTGGGGCTTCCAAAACTGCTCCTACGCATCCCTATAATGATCCTATAGCAAAGGACACTGATGACAGTAAGGCTTTTGATTACAGTGGAGGACACACTCTTCCAACAAATGTGGAACCCAAATAG 2898 42.96 MSAVLTLLLVAFFYAGIDTTISLTHFGDSAALVSLKNEWQNTPPSWGTSNDPCGTPWEGVLCNNSRVTALRLSAMGLKGKLGGDIGGLSELKSLDLSFNTDLTGSISPAIGKLQNLNILILAGCGFSGNIPEELGNLSKLSFLALNSNKFTGTIPPSLGKLSELYWLDLASNQLTGSIPVSTSESPGLDLLLKAKHFHFNKNQLSGSISPKLFRSEMVLIHILFDGNSLSGSIPPTLGLVKTLEVLRLDRNSLTGPVPSNLNNLTNVDELNLANNKLTGPMPNLTDMYSLNYVDLSNNSFDSSAAPEWFSNLQSLTTLVVEHGSIQGSVPQAVFSLPQIQQIKLKNNSFNGTLSMGDTISPQLQLVDLQSNGISEFTFGSEYSRTLMLTGNPVCTTDNTLSNTKYCQLRDHTTQPYSTSLLYCGSKLCPPAERLNPQSCECAFPFQGTLYFRAPSFRELSNVTLFHLLESSLWTKLELTTGSVFIQNPFFNVDDYLQMELALFPPNGKYFNRSDIQRIGFALSNQTYKPPKAFGPFYFIASPYGFPDNARRTEVSSVVIIGVAIGCAILVLGLIGVGIYAIRQKKRAEKAIVLSRPFASWAPSGDDSGGAPQLKGARWFSYDELKKCTNSFSMSNEIGSGGYGKVYRGVLVDGQVVAIKRAQQGSRQGGIEFKTEIELLSRVHHKNLLGLIGFCFEQEEQMLVYEFMPNGTLRDSLSGKSGIILDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVLDSQKGHVSTQVKGTLGYLDPEYYMTQQLSEKSDVYSFGVVMLELLTAKLPIQKGKYVVREVRTLMNKNEEEYYGLKQILDAAILNNTTAITGLGKFLELAMQCVEESAAERPTMSEVGKAIESILQSDGIDTNATTPSTSATEFGASKTAPTHPYNDPIAKDTDDSKAFDYSGGHTLPTNVEPK 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 914044 920047 - CmoCh06G001680.1 Cmo06g00168 383730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00168 965 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Cmo06g00168 965 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Cmo06g00168 965 Pfam Protein tyrosine and serine/threonine kinase 633 899 IPR001245 GO:0004672|GO:0006468
Cmo06g00168 965 SMART serkin_6 631 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00168 965 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 938 - -
Cmo06g00168 965 Gene3D Ribonuclease Inhibitor 284 419 IPR032675 -
Cmo06g00168 965 PANTHER LRR RECEPTOR-LIKE KINASE 1 938 - -
Cmo06g00168 965 MobiDBLite consensus disorder prediction 909 965 - -
Cmo06g00168 965 Gene3D Transferase(Phosphotransferase) domain 1 707 923 - -
Cmo06g00168 965 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Cmo06g00168 965 Gene3D Ribonuclease Inhibitor 184 283 IPR032675 -
Cmo06g00168 965 CDD STKc_IRAK 637 905 - -
Cmo06g00168 965 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Cmo06g00168 965 MobiDBLite consensus disorder prediction 909 930 - -
Cmo06g00168 965 SUPERFAMILY Protein kinase-like (PK-like) 616 910 IPR011009 -
Cmo06g00168 965 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00168 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Cmo06g00168 965 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524
Cmo06g00168 965 SUPERFAMILY L domain-like 36 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00168 Cmo-Chr6:914044 Cmo13g00001 Cmo-Chr13:22044 3.21E-161 dispersed
Cmo14g01155 Cmo-Chr14:9107560 Cmo06g00168 Cmo-Chr6:914044 0 transposed
Cmo20g01028 Cmo-Chr20:8825713 Cmo06g00168 Cmo-Chr6:914044 0 transposed
Cmo14g00001 Cmo-Chr14:550 Cmo06g00168 Cmo-Chr6:914044 5.88E-57 wgd
Cmo03g00291 Cmo-Chr3:4131651 Cmo06g00168 Cmo-Chr6:914044 4.53E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74384 PF07714 PK_Tyr_Ser-Thr 1.90E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00168 - - csv:101220026 1606.27