Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00170 ATGAAAGTGTTGTGGAGCAGCAATTCCATCTCTCCCACGACGTCTGCCATTGCTACTGTCACTGTCATTGCAACAGTAATTTGTCCATTTATTGCTTTTTGTCAAACTAGTCCAGTCGGAATGGGGAACTGCGGTACCAGAGAAGAGTCTGCTGTTGTTTCCAATGCTCAAGTTCAACAGTTGCATACGTTATCGTCTTCATTGGCTGTGAAAAACGGCAGCAACAATGCTACAGATAAAAAGCATATTCATAACCGGTCCATATCAGATCTAAGCGATCCTTCGACCCCTCGCAGCCTCGAGGATTTGAGAAAGAATTCGGTGCTTTACACACACATTATTGCCTTCACATTGTTCGAGCTGGAAACTATCACCAAGAGTTTCCGTTCCGATTACATTCTGGGAGAGGGCGGATTTGGAACTGTTTATAAAGGCTACATTGACGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTTGCTGTCAAGGTTCTCAATAAGGAAGGCCTCCAGGGACACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACACCCAAACCTTGTAAAGTTGATTGGTTACTGCTGCGAGGATGACCACAGATTACTTGTCTACGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCATTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCAGCCAAGGGTCTTGCTTTCCTACACAATGCTGAAAGGCCCGTTATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGGCTTGCGAAAGCTGGACCTCAAGGTGATGAGACACATGTTTCAACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGCCACTTGACAGCAAGGAGTGATGTATACAGCTTTGGTGTTGTTCTTCTGGAGCTTTTGACAGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAGCTAAATGACAAGAGGAAGTTGCTACAGATAATCGACCCCCGATTAGAAAATCAATATTCGACAAGGGCAGCACAGAAGGCCTGCAGCCTGGCATACTATTGCCTGAGCCAGAACCCCAAAGCAAGACCCTTAATGAGCGATGTGGTCGAAACTTTGGAACCATTACAGAGCAGTAACGGTGCAACTGAATCGGGAAGTAGCCCATTTGTTAGGGGGGGCATCCCTGATTACAGGATGCGGCCAAGGTTCGCCGACAATGTTGGTCCTGGTGGTGCCAATTGCCGGTCTCCTAACCCCACCTGTTCCCCCAGCGTCCCTGCGGCTTGTAGGGTTAGATGA 1398 46.71 MKVLWSSNSISPTTSAIATVTVIATVICPFIAFCQTSPVGMGNCGTREESAVVSNAQVQQLHTLSSSLAVKNGSNNATDKKHIHNRSISDLSDPSTPRSLEDLRKNSVLYTHIIAFTLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSTRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSNGATESGSSPFVRGGIPDYRMRPRFADNVGPGGANCRSPNPTCSPSVPAACRVR 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 921199 930329 - CmoCh06G001700.1 Cmo06g00170 383732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00170 465 Gene3D Phosphorylase Kinase; domain 1 93 210 - -
Cmo06g00170 465 CDD STKc_IRAK 134 408 - -
Cmo06g00170 465 Gene3D Transferase(Phosphotransferase) domain 1 211 420 - -
Cmo06g00170 465 Pfam Protein tyrosine and serine/threonine kinase 133 405 IPR001245 GO:0004672|GO:0006468
Cmo06g00170 465 ProSiteProfiles Protein kinase domain profile. 128 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00170 465 SUPERFAMILY Protein kinase-like (PK-like) 104 406 IPR011009 -
Cmo06g00170 465 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 69 452 - -
Cmo06g00170 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cmo06g00170 465 MobiDBLite consensus disorder prediction 408 427 - -
Cmo06g00170 465 ProSitePatterns Protein kinases ATP-binding region signature. 134 163 IPR017441 GO:0005524
Cmo06g00170 465 PANTHER OS01G0588500 PROTEIN-RELATED 69 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00774 Cmo-Chr5:4393670 Cmo06g00170 Cmo-Chr6:921199 7.16E-157 dispersed
Cmo06g00170 Cmo-Chr6:921199 Cmo11g00746 Cmo-Chr11:3638468 6.10E-159 dispersed
Cmo08g00772 Cmo-Chr8:4868951 Cmo06g00170 Cmo-Chr6:921199 9.33E-133 dispersed
Cmo11g00780 Cmo-Chr11:3834396 Cmo06g00170 Cmo-Chr6:921199 1.52E-106 dispersed
Cmo16g00566 Cmo-Chr16:2755340 Cmo06g00170 Cmo-Chr6:921199 2.24E-152 dispersed
Cmo06g00170 Cmo-Chr6:921199 Cmo14g00001 Cmo-Chr14:550 1.45E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74385 PF07714 PK_Tyr_Ser-Thr 3.70E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00170 - - csv:101220268 799.275