Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00177 ATGATTTTCAAACTATTTCTCCTTCTTCTCTTAGCTCCTGCTGCTGTTCATTGTTTAGACACTGTTTTCAACGATGATGTTCTTGGGTTGATAGTCTTCAAAGCTGGCCTTCAAGATCCATTGGGTAAACTCATATCATGGAATGAAGAAGATGATACCCCCTGCAATTGGTTTGGTATCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGATTGTTCTTGATGGCTTCTCTTTGTCTGGCCACATCGATCGTGGGCTTCTCAGGTTACAGTTCCTTCAGATTCTCTCACTTTCCAACAACAATTTCACTGGCCCAATCAACTCTGCTCTTGCTCATCTTACAAGCTTACAAGTTCTTGATTTGAGTGACAACAGTTTATCAGGATCCATCCCTGAACAGCTCTTCCTGCAATGTGGATCAATAAGAGTCATTTCCTTTGCCAGAAACAATCTCACAGGACAAATCCCACAATCCTTAACCTCTTGCTTTTCTCTAGAGATTCTAAACTTTTCATCAAATCATTTATCTGGGAAATTGCCATCTGGGTTATGGTATTTGAGAGGGATTCAATCACTAGATTTCTCAAACAACTTGCTTGAAGGGCAGATTCCTTCTGGGATTCAAAGTTTATATGATTTGAGATTGGTTAACTTACAGAAGAATCGTTTTTCTGGAAGGGTTCCTGAGGATATTGGTGGCTGTTTGTTTTTGAAATCAATTGATTTTAGTGATAACATCCTTTCTGGTGGGCTACCAGAGTCAATGCAGATGCTTAGTTCTTGCAGTTATTTGAATTTACGAGGGAATTCTCTGATGGGTGAAGTTCCTCGTTGGGTTGGAGAGCTTAAAAATCTTGAGATTTTGGATCTTTCTGCTAATAACTTCTCTGGTAAAGTGCCAAGTTCAATAGGAAATCTTCAATTGTTGAAGAAGTTTAATGTTTCTATGAACAATTTTACTGGAAACTTGCCTGAATCCATGGCGGATTGTAAGAATCTTTTGAGTATTGATGCTAGCCATAATCATTTGAATGGGTATCTCCCATCTAATGTTGGAGAGCTTAGGAACTTGCTGTTGCTGAATTTATCAAGAAACCATCTCGTGGGTTCTGTTCCTGGTAGTATTGGTGAGCTGAAATCAGTATATGTTCTTGACTTCAGTGATAATCAATTGAATGGAAGTGTTCCTGTTGAAATTGGAGGAGCTGTCTCACTCAAGGAGTTGTGGCTGGAGAAGAACTTACTCACTGGGGAAATTCCTATCTCCATTGACAAATGCTCGTTGTTAACATCATTGATGGTTTCTCACAACAACCTCACAGGCACAATTCCTGCTGCTCTTGCAAATCTCTCCGACCTTCAAAACGTAGACTTGTCTTTCAACAAACTCACTGGAAGCCTGCCCAAGGAGCTCACTAATCTTTCCCACCTCCTATCCTTTAACATCTCCCACAATCACCTTAATGGAGAGCTCCCAGCTGGGGGCTTCTTCAACACCATATCTCCCTTCTCCATTTCACATAACCCATCTCTTTGTGGTGCTGTCGTCAACCGGTCCTGCCCCTCCGTCCACCCGAAACCAATCGTCCTGAACCCGAACTCCTCCGATACCAACGCCAATTCCCCCTCCCACAAGCATCACCATGAGATAATACTAAGCATATCATCCATCATTGCTATTGGTGCAGCTTCGTTTATCTTACTTGGTGTGGTAGCTGTGAGTATCCTTAACATCCGTGCAAGGTCCTCACAGGCACGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAACTGCTCCCCAAAAACTAACCCAGACTATGGAAAGCTAGTCATGTTTTCAGGAGATGCAGAGTTTGTGTTTGGTGCTCAAGCATTGTTGAATAAGGATTGCGAGCTCGGTCGAGGCGGATTTGGAGTTGTTTACAGAACGGCGCTTCGAGACGGTTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGCTTGATCAAGTCCCAAGAGGATTTTGAGAGTGAAGTGAAGAAGCTGGGGCAGATCAGGCATCATAATCTGGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTACTTATCTATGAACATGTCCAAAATGGAAGCTTGTATAAACATCTACACGACCGAACGAGCGACGATTGCTTGTCGTGGCAGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGGTTGGCTTATTTGCACCAGAATGATATAATTCATTACAATTTGAAGTCAACCAATGTCTTGATAGACAGTTCTGGGACACCAAAAGTGGGGGACTATGGCTTGGCAAGGCTGCTGCCAATGTTGGACCGTTGCATCTTAAGCAGCAAAATCCAAAGTGCTTTGGGCTATATGGCTCCAGAGTTCGCCTGCAAAACAGTAACTATAACCGAGAAATGTGATGTTTATGGGTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCAGCTTTGGACGATGGCACGGTCGAGCGATGTGTCGATGAGAGGCTTCAATCGAACTTCCGTGTCGAGGAGGCCGTTCCTGTAATGAAACTTGGTTTGATATGTGCTTCTCAAGTGCCATCTAACAGGCCAGATATGAATGAGGTTGTCAATATATTAGAGATGATCCAATCCCCATGTGAAGCTGAGGAGGGCTTGGAATGA 2739 43.15 MIFKLFLLLLLAPAAVHCLDTVFNDDVLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTNRVSEIVLDGFSLSGHIDRGLLRLQFLQILSLSNNNFTGPINSALAHLTSLQVLDLSDNSLSGSIPEQLFLQCGSIRVISFARNNLTGQIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGIQSLDFSNNLLEGQIPSGIQSLYDLRLVNLQKNRFSGRVPEDIGGCLFLKSIDFSDNILSGGLPESMQMLSSCSYLNLRGNSLMGEVPRWVGELKNLEILDLSANNFSGKVPSSIGNLQLLKKFNVSMNNFTGNLPESMADCKNLLSIDASHNHLNGYLPSNVGELRNLLLLNLSRNHLVGSVPGSIGELKSVYVLDFSDNQLNGSVPVEIGGAVSLKELWLEKNLLTGEIPISIDKCSLLTSLMVSHNNLTGTIPAALANLSDLQNVDLSFNKLTGSLPKELTNLSHLLSFNISHNHLNGELPAGGFFNTISPFSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNANSPSHKHHHEIILSISSIIAIGAASFILLGVVAVSILNIRARSSQARSAALALSAGEDFNCSPKTNPDYGKLVMFSGDAEFVFGAQALLNKDCELGRGGFGVVYRTALRDGCLVAIKKLTVTSLIKSQEDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEHVQNGSLYKHLHDRTSDDCLSWQQRFKIVLGMAKGLAYLHQNDIIHYNLKSTNVLIDSSGTPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDDGTVERCVDERLQSNFRVEEAVPVMKLGLICASQVPSNRPDMNEVVNILEMIQSPCEAEEGLE 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 968492 973287 + CmoCh06G001770.1 Cmo06g00177 383739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00177 912 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Cmo06g00177 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 342 903 - -
Cmo06g00177 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 4 350 - -
Cmo06g00177 912 Gene3D Transferase(Phosphotransferase) domain 1 706 909 - -
Cmo06g00177 912 Gene3D Ribonuclease Inhibitor 185 313 IPR032675 -
Cmo06g00177 912 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Cmo06g00177 912 Gene3D Phosphorylase Kinase; domain 1 623 705 - -
Cmo06g00177 912 ProSiteProfiles Protein kinase domain profile. 629 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00177 912 SUPERFAMILY Protein kinase-like (PK-like) 632 904 IPR011009 -
Cmo06g00177 912 SUPERFAMILY L domain-like 259 514 - -
Cmo06g00177 912 CDD STKc_IRAK 635 899 - -
Cmo06g00177 912 PRINTS Leucine-rich repeat signature 117 130 - -
Cmo06g00177 912 PRINTS Leucine-rich repeat signature 283 296 - -
Cmo06g00177 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 342 903 - -
Cmo06g00177 912 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 350 - -
Cmo06g00177 912 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515
Cmo06g00177 912 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cmo06g00177 912 Pfam Protein tyrosine and serine/threonine kinase 631 897 IPR001245 GO:0004672|GO:0006468
Cmo06g00177 912 SUPERFAMILY L domain-like 24 298 - -
Cmo06g00177 912 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Cmo06g00177 912 SMART LRR_typ_2 211 235 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 451 474 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 283 307 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 90 113 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 475 499 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 114 138 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 355 379 IPR003591 -
Cmo06g00177 912 SMART LRR_typ_2 187 210 IPR003591 -
Cmo06g00177 912 Gene3D Ribonuclease Inhibitor 314 527 IPR032675 -
Cmo06g00177 912 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00177 Cmo14g00008 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00177 Cmo-Chr6:968492 Cmo14g00008 Cmo-Chr14:49629 0 dispersed
Cmo15g00181 Cmo-Chr15:831929 Cmo06g00177 Cmo-Chr6:968492 0 wgd
Cmo04g01127 Cmo-Chr4:5753828 Cmo06g00177 Cmo-Chr6:968492 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74386 PF07714 PK_Tyr_Ser-Thr 3.20E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00177 - - csv:101222148 1490.32