Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00184 | ATGAACACGACTCTCCCTCTTCTCCAGATCCATAATCTCGATGTCGAGTGGTTTGTCGATCTGTTTTTGGAGGATTACTTGTTGATTGATGAAGTTTTATTGGCTATCTTGTCTGTCCCTTTGTATAGCACTGTGACCTTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAGGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACGAATCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGGCCTAGTATTCCAGGCGACATACCTCCTGATCTAGCATTTATAGTTCAGTCGTGTTGGGTTGAAGATCCCAACATGAGGCCCAGCTTCAGCCAGATCATCCGGATGCTTAATGAATATCTATTTACACTCCCACCTCCTTTGTTATCTTCACAAGCATCTTATACAACCGAGACAGCAACGACTAGCGACGGTGCTGTAACCGAGTTCTCCGCTCGAGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAAAAGGCTAAGGGCTCGCAATAA | 570 | 45.09 | MNTTLPLLQIHNLDVEWFVDLFLEDYLLIDEVLLAILSVPLYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPPPLLSSQASYTTETATTSDGAVTEFSARARGKFGFLRQLFAAKKAKGSQ | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1004284 | 1005904 | - | CmoCh06G001840.1 | Cmo06g00184 | 383746 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00184 | 189 | SMART | tyrkin_6 | 5 | 132 | IPR020635 | GO:0004713|GO:0006468 | |
| Cmo06g00184 | 189 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 42 | 167 | - | - | |
| Cmo06g00184 | 189 | ProSiteProfiles | Protein kinase domain profile. | 1 | 136 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo06g00184 | 189 | SUPERFAMILY | Protein kinase-like (PK-like) | 53 | 153 | IPR011009 | - | |
| Cmo06g00184 | 189 | Gene3D | Transferase(Phosphotransferase) domain 1 | 31 | 161 | - | - | |
| Cmo06g00184 | 189 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 42 | 167 | - | - | |
| Cmo06g00184 | 189 | Pfam | Protein tyrosine and serine/threonine kinase | 52 | 132 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00184 | Cmo-Chr6:1004284 | Cmo10g00095 | Cmo-Chr10:410087 | 4.01E-47 | dispersed | |
| Cmo14g00014 | Cmo-Chr14:77131 | Cmo06g00184 | Cmo-Chr6:1004284 | 5.68E-93 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 74388 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-17 | CL0016 | Cmo | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00184 | - | - | csv:101223101 | 268.085 |