Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00205 ATGCAGATTCTTGCACCAAAAATAGCTGTTTGGTGCTCTAAATCATCCAATAAGAACAGAAAATGGAAGATCCAACAATGGAGAAATGGTTATTCGTACCTCAATGCTCTGTTTTTGGCTCATCTTTTGGCTTTGTCTCTTCAATCTGTCACCGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCATGAACTTATTGATGTGAAAGGAGCTTTACATAGCTGGAATGGCAGTAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGACAAGTCATTGTCATACAGCTTCCATGGAAGGAACTCGCCGGCAGGATTTCCGACAGAATTGGGCAGCTCCGGGAACTTCGGAAGCTCAGCCTTCATGATAATGCGATCTCCGGCACCATTCCTCGGTCGGTCGGGTACCTTCCGAATCTCAGAGGAATTTATCTTTTCAACAACAGATTTTCAGGGTCTATTCCTCCTACAATTGGTAATCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTCCTCACTGGAGAAATTCCTTCTAGTCTTGCAAATTCAACCAAATTGATTAGAGTTAATCTGAGCTACAATTCATTGTCGGGATCCATACCTCGAAGTTTTACGCAGTCGTTTTCTCTTGTAATTCTTGCCCTTCAGCACAATAATGTTTCTGGGATTGTCCCAGATTCTTGGGGTGGGTTTGGAAACAGAACTTGTCCACTTGGGGTTTTAACGCTTGATCATAATGTTATATCTGGAACAATTCCACCTTCTTTGACCAAATTGGAATGGCTTCAAGAGATTTCTTTCAGTGAAAATAACATCTCTGGGGTTATACCAGTCGAAATCGGCAGGCTGAAGAGGCTTCGCCGGTTGGATTTGTCGAAGAACGCCATCAATGGTGGCTTCCCTTCAAGTTTCACCAATCTGTCCTCTCTTGAGTCATTGAATGTTGAAAACAATCGCCTTGAAAGCCAGATTCCTAGAGATATTGATAGATTGCAGAATCTCTCAGTGATTAAGCTTGGGAAGAACCGTTTTAATGGGGAGATTCCTGCAAGTTTAGGGAACATTTCTGCTATTAAACATCTTGATTTCTCAGAAAATAACTTCATGGGACAGATTCCACCATCATTGACTAATTTGTTGAATCTAACATCTTTCAATGTCTCCTACAACAATCTCTCTGGTCCTGTCCCAATTCTCCTGTCTAATAAGTTCAATGCGAGCTCTTTTGTTGGGAACCTTAAACTCTGTGGCTTTAGTTCTTCAACTCCATGTCTACCTGCATCCTCCCCACAGAATATTACAAACCCATCAACCGATGTCCCGAAACTGCATCGCCACCGCAAACTAAGTGTAAAGGACATAATTCTGATAGCGGCCGGAGCTCTGTTGGTGCTTCTACTTGTTCTTTGCTCGATTTTGCTCTGTTGTTTGTTGTCAAAAAGAGCTGCTTCCAAAAAGAATGACAACATAACAGCCAAACAAGCTGCTGTGAGGAGCGTCGAGAAAGGCAGTACTGAAGTAGGGGCGAGCGAAGCTGGTGGAAAGCTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCCGATGATCTTCTGTGTGCAACTGCGGAGATTATGGGCAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGTAATGAAGTAGCAGTGAAAAGATTAAGGGAAAAGACAACAAAAGGGCAGAATGAATTCGAAACTGAAGTTGCGGGACTCGGAAAAATTCGACACCCGAATCTACTTGCTCTTACAGCATACTACTTGGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGAATACATGCCTAGAGGAAGCCTCTCTTCCTTTCTTCATGCTCGCGGGCCGGAAACGACAGTCGATTGGGCAACGAGGATGAAGATAGTGATCGGAATTACGCAAGGCTTAAACTATCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACATCCAGCAACATTTTGTTGGATGATCAAACCAATGCTCGTATAGCGGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGAACACAGGGCTACAATGCACCAGAGCTAACAAAAACAAAGAAACCGACAGCAAAGACAGATGTTTACAGCCTTGGAGTCATAATATTGGAACTCTTGACAGGAAAATCACCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAAAAGTGAAGGAGGAGTGGACAAATGAAGTGTTTGATTTGGAGCTGATGAAAGACACACCCAATATTGGCGATGAACTGCTGAACACTTTAAAACTAGCCCTGCATTGTGTCGATCCCTCACCAGCTGCTCGGCCCGACGTACCGCAAATTCTCCAGCAACTGGAGGAAATTAAGGCGGCTTCTACATCTGGTGATGATGGCGCCAAAGATCAACCAGCAAATGAATAG 2514 43.91 MQILAPKIAVWCSKSSNKNRKWKIQQWRNGYSYLNALFLAHLLALSLQSVTGQMWDGVAVTQGDFQALQAIKHELIDVKGALHSWNGSNGACSGQWAGIKCVKGQVIVIQLPWKELAGRISDRIGQLRELRKLSLHDNAISGTIPRSVGYLPNLRGIYLFNNRFSGSIPPTIGNLPLLQTLDLSNNFLTGEIPSSLANSTKLIRVNLSYNSLSGSIPRSFTQSFSLVILALQHNNVSGIVPDSWGGFGNRTCPLGVLTLDHNVISGTIPPSLTKLEWLQEISFSENNISGVIPVEIGRLKRLRRLDLSKNAINGGFPSSFTNLSSLESLNVENNRLESQIPRDIDRLQNLSVIKLGKNRFNGEIPASLGNISAIKHLDFSENNFMGQIPPSLTNLLNLTSFNVSYNNLSGPVPILLSNKFNASSFVGNLKLCGFSSSTPCLPASSPQNITNPSTDVPKLHRHRKLSVKDIILIAAGALLVLLLVLCSILLCCLLSKRAASKKNDNITAKQAAVRSVEKGSTEVGASEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQNEFETEVAGLGKIRHPNLLALTAYYLGPKGEKLLVFEYMPRGSLSSFLHARGPETTVDWATRMKIVIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGTQGYNAPELTKTKKPTAKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASKVKEEWTNEVFDLELMKDTPNIGDELLNTLKLALHCVDPSPAARPDVPQILQQLEEIKAASTSGDDGAKDQPANE 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1113470 1116433 + CmoCh06G002050.1 Cmo06g00205 383767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00205 837 Pfam Leucine rich repeat N-terminal domain 63 101 IPR013210 -
Cmo06g00205 837 Gene3D Transferase(Phosphotransferase) domain 1 626 834 - -
Cmo06g00205 837 ProSiteProfiles Protein kinase domain profile. 548 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00205 837 CDD STKc_IRAK 554 819 - -
Cmo06g00205 837 Gene3D Phosphorylase Kinase; domain 1 554 625 - -
Cmo06g00205 837 Gene3D Ribonuclease Inhibitor 254 444 IPR032675 -
Cmo06g00205 837 Gene3D Ribonuclease Inhibitor 61 252 IPR032675 -
Cmo06g00205 837 SUPERFAMILY L domain-like 86 432 - -
Cmo06g00205 837 Pfam Leucine rich repeat 177 235 IPR001611 GO:0005515
Cmo06g00205 837 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Cmo06g00205 837 Pfam Protein tyrosine and serine/threonine kinase 552 816 IPR001245 GO:0004672|GO:0006468
Cmo06g00205 837 SUPERFAMILY Protein kinase-like (PK-like) 552 820 IPR011009 -
Cmo06g00205 837 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 25 823 - -
Cmo06g00205 837 SMART LRR_typ_2 175 199 IPR003591 -
Cmo06g00205 837 SMART LRR_typ_2 299 322 IPR003591 -
Cmo06g00205 837 SMART LRR_typ_2 323 347 IPR003591 -
Cmo06g00205 837 SMART LRR_typ_2 127 151 IPR003591 -
Cmo06g00205 837 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 25 823 - -
Cmo06g00205 837 MobiDBLite consensus disorder prediction 818 837 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00334 Cmo06g00205 CCT
Cmo06g00205 Cmo14g00037 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00205 Cmo-Chr6:1113470 Cmo03g00727 Cmo-Chr3:6230533 8.49E-56 dispersed
Cmo14g00037 Cmo-Chr14:184002 Cmo06g00205 Cmo-Chr6:1113470 0 wgd
Cmo04g01155 Cmo-Chr4:5892448 Cmo06g00205 Cmo-Chr6:1113470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74391 PF07714 PK_Tyr_Ser-Thr 9.40E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00205 - - bhj:120090401 1407.51