Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00208 ATGGCTATAGCCTTTGCAGCTCCTTTGGCTCTTCTTTCTGTGCTCCTTTCTTTGGCTGCTCCTTCTGTGGAGCCTCCATTTACCTACCATGGATTTAACGACTCGAAACTTGCTCTTGATGGAGCGATTGTTATGAATCCATCTGGTGCGTTGAGGCTCACCAATCGATCACTTAACGCTATAGGGCATGCATTCTATCCGACTCCATTCCAGATGTTTGATAAAAATTCTGACCCATCTGCAAATGTTTCATCCTTCAACACAACTTTTGTTTTTGCAATCAATCCATCGAGCCCCGGACAAGGTGGCTTTGGCCTGGCCTTCGTCTTAGCTCCATCAACCAATTTTGAAGGTGCAGATAGTAAACACTTCCTTGGATTGTTCAACTCTACTAACGATGGTAACACTTCAAACCATATATTTGCTGTTGAATTTGACACTGTAAATGGGCATGAGGAAGACAAGAACACCAAAGGGAATCATGTTGGGATCAATATCAATGGCGTTTCATCAGTAGCATCCAAACCTGCTTCTTATTCCGACTATGGCGATGCTAATGAAAAGGACTTCCAAATGGATTCTGGTGATCCTATCATTGCTTGGATTGAGTATGATGGCCCCAACAAAATTGTGAACGTCACCGTAGCTCCCTTCACAAAACAGCAAAAGAAACCAACAGATCGACTCCTTTCCCGTCGGATTGACCTGAAAGATGTTCTAAAGGAACAAATGTTTGTTGGCTTCTCGGCTTCGACAGGAGACCAAACAAGCTCTCATTACATTTTGGGATGGAGTTTTGCAGTGAATGGACCAGCGCCGTCGTTGAATTACTCTCTCCTTCCCAACCCTCCAAAAGAGCAAGATCTTGTTCCTCCGCCATCCAATTCCCACTTCAAGGTACTCATAGCAGTTTTTTCTGTGGTGGCCATTCTAGGAATCTTTTTCTTAGCTTTCTGGTTTAGAAGAATGTGGCAAACTGAGAGGCTTGAGGATTGGGAACGAGACTGTCCTCATAGATTCAACTACAGAGATCTTTACACAGCAACAAAAGGATTCAAAAGCAGCGAGCTAATTGGAATTGGGGGGTTTGGTTCAGTATACAAAGGTCAGTTACGTTCAACTGGAATTGAGATTGCTGTGAAGAGAGTTAGAGGAAACTCGCGCCAAGGAATGAAAGAATTCGCAGCAGAAATCGAAAGCTTAGGACGACTAAGACACAAAAACTTGGTGAATCTCCAAGGATGGTGCAAGAAAAAGAACGATCTACTCATAGTTTACGATTATATACCAAATGGAAGCCTCTATTCACTTCTATATCATCCAAAAAACAACAACATATTGAATTGGAAACAGAGATTCAACATTCTCAAAGGAATTGCAGCAGGATTATTGTACCTTCACGAAGAGTGGGAGCAGGTAGTGATCCACCGAGATGTGAAGCCAAGCAATGTTCTAATAGACGCCGACATGAATGCCCGATTGAGCGATTTCGGTCTCGCCAGGCAATACGACCACGCCGAAGAATCGCACACAACCGGCGTCGTCGGCACGATTGGCTACATAGCGCCGGAGTTGGTACGCACCGGGAAGGCTTCGAAAAACACCGATGTGTTTGGCTATGGAGTTTTGCTTCTGGAAGTGGCATGTGGAAGAAAGCCTCTGGAATCGGATCAGTTCATACTGGTAGAATGGGTGATGGAATGCTATGAAACGGGACAGATCCTGTATGCGGCTGATCCGAAGTTGAATTTGGTTTATGAGGTTGAAGAAATGGAGATGGTGCTGCAGTTAGGGCTTCTTTGTACTCACCAGAGACCAGAAGCTCGGCCGACCATGAGACAGGTCACGAGGTTCCTTCACGGCGACGATCCAGTTCCGGCGGTCGACGATTGGGCTTGTTCCCAAACTTACTCCAAATGTAACTCGAGAATTACTGAAGTGATTTCAGCAAGGTCTTATCGTTCCTTGTCCATTGGCGCCATTTCTTCTAGCTCCATAGACGCAGGCAGATAG 2013 45.11 MAIAFAAPLALLSVLLSLAAPSVEPPFTYHGFNDSKLALDGAIVMNPSGALRLTNRSLNAIGHAFYPTPFQMFDKNSDPSANVSSFNTTFVFAINPSSPGQGGFGLAFVLAPSTNFEGADSKHFLGLFNSTNDGNTSNHIFAVEFDTVNGHEEDKNTKGNHVGININGVSSVASKPASYSDYGDANEKDFQMDSGDPIIAWIEYDGPNKIVNVTVAPFTKQQKKPTDRLLSRRIDLKDVLKEQMFVGFSASTGDQTSSHYILGWSFAVNGPAPSLNYSLLPNPPKEQDLVPPPSNSHFKVLIAVFSVVAILGIFFLAFWFRRMWQTERLEDWERDCPHRFNYRDLYTATKGFKSSELIGIGGFGSVYKGQLRSTGIEIAVKRVRGNSRQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGSLYSLLYHPKNNNILNWKQRFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDADMNARLSDFGLARQYDHAEESHTTGVVGTIGYIAPELVRTGKASKNTDVFGYGVLLLEVACGRKPLESDQFILVEWVMECYETGQILYAADPKLNLVYEVEEMEMVLQLGLLCTHQRPEARPTMRQVTRFLHGDDPVPAVDDWACSQTYSKCNSRITEVISARSYRSLSIGAISSSSIDAGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1124871 1126883 + CmoCh06G002080.1 Cmo06g00208 383770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00208 670 ProSiteProfiles Protein kinase domain profile. 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00208 670 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Cmo06g00208 670 SMART serkin_6 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00208 670 CDD STKc_IRAK 358 619 - -
Cmo06g00208 670 Gene3D - 25 275 - -
Cmo06g00208 670 PANTHER - 26 666 - -
Cmo06g00208 670 SUPERFAMILY Protein kinase-like (PK-like) 336 629 IPR011009 -
Cmo06g00208 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cmo06g00208 670 CDD lectin_legume_LecRK_Arcelin_ConA 27 270 IPR001220 GO:0030246
Cmo06g00208 670 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 26 666 - -
Cmo06g00208 670 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Cmo06g00208 670 Gene3D Transferase(Phosphotransferase) domain 1 429 638 - -
Cmo06g00208 670 Pfam Protein kinase domain 353 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00208 670 Pfam Legume lectin domain 27 278 IPR001220 GO:0030246
Cmo06g00208 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 285 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00208 Cmo-Chr6:1124871 Cmo14g00123 Cmo-Chr14:542648 0 dispersed
Cmo01g00913 Cmo-Chr1:5144874 Cmo06g00208 Cmo-Chr6:1124871 0 transposed
Cmo14g00041 Cmo-Chr14:206184 Cmo06g00208 Cmo-Chr6:1124871 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74392 PF00069 Pkinase 1.10E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00208 - - cmax:111470194 1222.61