Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00209 ATGGTCAAACGAAATGAAAGCAACTCACCGTTTTTCACAGTCAACCTTCTTTACGCGACTCCGCTGAAAAACATTCAACTCCTCCGTCTCTCAACCCAATTCCTTCAAGATCGGTCAAACAAATTCTCTTTATTGATGAACAACACCGCCCCGCCGGTAGACATGGCCACCGGAACTCCGCCGTGGCTGAACACCGGCGACAACTCTTGGCAGATCACAGCCTCTACTCTGGTCGGACTTCAGAGCATGCCCGGCCTTGTAATTCTCTACGCAAGCATCGTTAAAAAGAAATGGGCTGTGAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTTTTGGTCGGCTACCGAATGGCCTTCGGCGATCAGCTGATTCCTCTGTGGGGTAAAGGGATTCCAGCTCTGGAGCAAAGTTACCTAATTGACCGAGCCAATATCCCTGAAAGTGGCCATGTAAGCCACGACGGAAGGGTAACGCCGAGAATTGAGCCGAATATTCCGATGGCTTCCCTGGTGTATTTCCAGTTCACCTTTGCTGCGATTACTGTGATTTTACTTGCCGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCGTACACCGTCGGCGCCTACACGATCTGGGGCGGAGGGTTCCTCTTCCAATGGGGCGTGATTGATTACTCCGGCGGCTTTGTTATTCATCTTTCTTCTGGAATTTCTGGCTTAACCGCCGCTTATTGGGTTGGGCCGAGGATTAAAAGCGACAGAGAGAGGTTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGATGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCACCGCACTCAGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTAAGCGCAGCGACGAGCCTGCTGGTGTGGACCATCTTGGATGTGTTCTACTTCGGGAAGCCATCAGTGATTGGAGCCATTCAGGGCATGATGACTGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTTGTGCAGACGTGGGCAGCTATTATAATGGGAGTTATGGGAGGGAGTATTCCATGGGTATCTATGATGATTCTCCATAAAAGGTTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCGGGCATGATGGGCGGGCTTCTAACGGGCCTTTTAGCAGAGCCCACTCTTTGCGAACTATACCTACCGATCCCCGACAGCCGCGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAGCAGCTGACCGGAGCCATGTTCATAATCGGGTGGAACATCGTCTCCACCACCATTATTCTCCTCTTCATTCGGCTGTTTATGCCGTTGCGGATGCCGGACGAGGAACTCATGATCGGAGACGACGCCGTCCACGGCGAGGAAGCTTATGCCCTGTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCAATGCGGCGGCGAATGTGGAAGAAGGAACTTCCCCGCCTTATATCAATGGTGCCAGAGGAGTAACCATCACTTTATCCGTCGTAAACGATGGAGATTCTTTCTTTTGCGATTTTCGTAACGATGAGTGTCTGTATTTTAAAGGAAATGAACGGCGAACGAAGCTCATAATGGTGATATTAGTGGGCGCACCTGGAAGCGGAAAGTCCACCTTCTGCGAACTCGTAATGGCTTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCCGGAACCAAAGCACAGTGTCTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGATGCAATCTTGAAATAGAGCAGCGTTCTGAGTTTGTGAAACTAGGTAGCTCTCTAGTGGATGTACATGCTGTTGTATTGGATCTTCCTGCACAGCTCTGTATCTCCCGTTCGGTTAAGCGGACCGGTCATGAAGGGAACCTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCGAACCTGAATGAAGGGTTCAAGCGTATAACATTTTGTCACAGTGAAACGGACGTTCAATCCGCCATAGATACGTATAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAATGCAGACAAGAAAGTACAATTAGGCATAATGAGGTTCTTAAAGAAAGCAGAAAATCCTGCTAAAACATGTTCTAATGCCAATACCAATAAGGATTTTCCAAGTTCTCAAACTACCCAGGAAAAGAAAGAGTCTTCCTGCACGATGTTGAGCAATGTCAATAAAGAGTCGGAGAAAGGCGAAAATCCAGGCGTTGGATCCTTAGAAAACAATATTTCTGGAAGTGATCCTCCAACTCTTGCATTTCCTTCTATTTCAACATCGGATTTCAAGTTCAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGATGGTGGAGGAATTCATGGATAAGCTTGGGAATGCCAGACTTGTTATGGTAGACTTAAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCGGCCAAGAAAAATATTTGTTCCACCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAAGTCAGATGGTGGATTGCACTGCAATGTAATAGCCAATGCTGCAAACTGGCGATTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCCAGTCTGGAAGAGGCAACAAAACAACAAGCCAAGTCCCTTCGACCTGGCAATGTTGTGGCCGTTCAATTGCCTTCAACTTCTCCTTTGTTTAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCTCAAAGACCAAATTATCTCAACAATGATTATGATGAAGGTTGCAAGCTTCTTCGTGATGCTTATTCTTCTCTATTTCAAGCCTTTATTTCAATAGTAAAAGATGAGTTTAAGTCGGCGAAGGGAATTGACGAACGCCTCGGCTCAGCACCTTCAGAATCACGAAAACACTCTGAGGACACCCATCACAAGTTTAAGAGAGCGGAGTTGCAAATTCCTGAAAGAAGCAAAAAGTGGAAAGGAACTCAGGAATCAGCTGAAGCATTAAACCAAAACAACAATAAGATTTCCCACAAGATGAGTAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGTATCCCGAGAGACATGCCAATATTGTACTGGAGACATCAGATGATGTTGTAGTACTGAATGATATTTATCCAAAAGCACGCAAGCATCTTCTGATAGTGGCTCGATATGAAGGCCTCGATCAACTAGCTGATGTACATAAAGAACACCTTCCACTGTTGAAAACGATGCACGCCGTGGGTATGAAGTGGATTGATAAGTTCATTCATGACGATGCATCGTTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTATAAGCCAAGATTTTGACTCCAGTCATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCGGTCGACGTTATAGACGAAGTCAGTAGCCATGGAAAGGCAATCATCAAGGACGACGAGAGCTTGATGTCTATGGAGTTTCGTTGCAACAGATGCAGAAGTGCCCATCCCAACTTACCCAAGCTGAAAACACATATTTCCAAATGCCAATCGCCTTTCCCTTCCACGCTACTCGAGGGCGGTCGTTTAGTGAATGCTTCAGTTTTGATGGCCTCAGGAAGCCTTAGTTAA 3858 47.05 MVKRNESNSPFFTVNLLYATPLKNIQLLRLSTQFLQDRSNKFSLLMNNTAPPVDMATGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDQLIPLWGKGIPALEQSYLIDRANIPESGHVSHDGRVTPRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTIWGGGFLFQWGVIDYSGGFVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVMGGSIPWVSMMILHKRLSFLQKADDTLGVFHTHAVAGMMGGLLTGLLAEPTLCELYLPIPDSRGAFYGKNGGVQFLKQLTGAMFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANVEEGTSPPYINGARGVTITLSVVNDGDSFFCDFRNDECLYFKGNERRTKLIMVILVGAPGSGKSTFCELVMASSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLEIEQRSEFVKLGSSLVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPNLNEGFKRITFCHSETDVQSAIDTYKSLGLHDALPDGCFGQKNADKKVQLGIMRFLKKAENPAKTCSNANTNKDFPSSQTTQEKKESSCTMLSNVNKESEKGENPGVGSLENNISGSDPPTLAFPSISTSDFKFSHEKAAEIIVEMVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNICSTKFFTFVGDITKLKSDGGLHCNVIANAANWRLKPGGGGVNAAIFSAAGPSLEEATKQQAKSLRPGNVVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQAFISIVKDEFKSAKGIDERLGSAPSESRKHSEDTHHKFKRAELQIPERSKKWKGTQESAEALNQNNNKISHKMSKHWGSWAQALYNTAMYPERHANIVLETSDDVVVLNDIYPKARKHLLIVARYEGLDQLADVHKEHLPLLKTMHAVGMKWIDKFIHDDASLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKAIIKDDESLMSMEFRCNRCRSAHPNLPKLKTHISKCQSPFPSTLLEGGRLVNASVLMASGSLS 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1128381 1135118 + CmoCh06G002090.1 Cmo06g00209 383771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00209 1285 ProSitePatterns HIT domain signature. 1167 1185 IPR019808 -
Cmo06g00209 1285 MobiDBLite consensus disorder prediction 759 811 - -
Cmo06g00209 1285 Pfam Macro domain 903 987 IPR002589 -
Cmo06g00209 1285 MobiDBLite consensus disorder prediction 1019 1038 - -
Cmo06g00209 1285 ProSiteProfiles HIT domain profile. 1085 1193 IPR011146 GO:0003824
Cmo06g00209 1285 Gene3D Leucine Aminopeptidase, subunit E, domain 1 804 869 IPR043472 -
Cmo06g00209 1285 SUPERFAMILY HIT-like 1069 1242 IPR036265 -
Cmo06g00209 1285 Gene3D - 552 720 IPR027417 -
Cmo06g00209 1285 Pfam Scavenger mRNA decapping enzyme C-term binding 1087 1198 - -
Cmo06g00209 1285 Pfam Ammonium Transporter Family 70 492 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cmo06g00209 1285 ProSiteProfiles Macro domain profile. 868 1121 IPR002589 -
Cmo06g00209 1285 SMART YBR022w_8 880 1054 IPR002589 -
Cmo06g00209 1285 TIGRFAM amt: ammonium transporter 67 492 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo06g00209 1285 Gene3D - 1080 1261 IPR036265 -
Cmo06g00209 1285 PANTHER AMMONIUM TRANSPORTER 2 56 529 - -
Cmo06g00209 1285 ProSitePatterns Ammonium transporters signature. 237 262 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cmo06g00209 1285 PANTHER AMMONIUM TRANSPORTER MEP2 56 529 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo06g00209 1285 Gene3D Ammonium transporter AmtB like domains 45 495 IPR029020 -
Cmo06g00209 1285 SUPERFAMILY Ammonium transporter 62 474 - -
Cmo06g00209 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 707 IPR027417 -
Cmo06g00209 1285 SUPERFAMILY Macro domain-like 862 1001 IPR043472 -
Cmo06g00209 1285 Pfam AAA domain 564 686 - -
Cmo06g00209 1285 Pfam C2HE / C2H2 / C2HC zinc-binding finger 1203 1257 IPR032566 -
Cmo06g00209 1285 Gene3D Leucine Aminopeptidase, subunit E, domain 1 870 1011 IPR043472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00209 Cmo-Chr6:1128381 Cmo12g00985 Cmo-Chr12:9210128 1.21E-19 dispersed
Cmo03g00674 Cmo-Chr3:5981770 Cmo06g00209 Cmo-Chr6:1128381 8.57E-170 transposed
Cmo05g00418 Cmo-Chr5:1926187 Cmo06g00209 Cmo-Chr6:1128381 4.42E-179 transposed
Cmo14g00042 Cmo-Chr14:211056 Cmo06g00209 Cmo-Chr6:1128381 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00209 K10863 - csv:101216867 1210.67