Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00209 | ATGGTCAAACGAAATGAAAGCAACTCACCGTTTTTCACAGTCAACCTTCTTTACGCGACTCCGCTGAAAAACATTCAACTCCTCCGTCTCTCAACCCAATTCCTTCAAGATCGGTCAAACAAATTCTCTTTATTGATGAACAACACCGCCCCGCCGGTAGACATGGCCACCGGAACTCCGCCGTGGCTGAACACCGGCGACAACTCTTGGCAGATCACAGCCTCTACTCTGGTCGGACTTCAGAGCATGCCCGGCCTTGTAATTCTCTACGCAAGCATCGTTAAAAAGAAATGGGCTGTGAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTTTTGGTCGGCTACCGAATGGCCTTCGGCGATCAGCTGATTCCTCTGTGGGGTAAAGGGATTCCAGCTCTGGAGCAAAGTTACCTAATTGACCGAGCCAATATCCCTGAAAGTGGCCATGTAAGCCACGACGGAAGGGTAACGCCGAGAATTGAGCCGAATATTCCGATGGCTTCCCTGGTGTATTTCCAGTTCACCTTTGCTGCGATTACTGTGATTTTACTTGCCGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCGTACACCGTCGGCGCCTACACGATCTGGGGCGGAGGGTTCCTCTTCCAATGGGGCGTGATTGATTACTCCGGCGGCTTTGTTATTCATCTTTCTTCTGGAATTTCTGGCTTAACCGCCGCTTATTGGGTTGGGCCGAGGATTAAAAGCGACAGAGAGAGGTTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGATGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCACCGCACTCAGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTAAGCGCAGCGACGAGCCTGCTGGTGTGGACCATCTTGGATGTGTTCTACTTCGGGAAGCCATCAGTGATTGGAGCCATTCAGGGCATGATGACTGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTTGTGCAGACGTGGGCAGCTATTATAATGGGAGTTATGGGAGGGAGTATTCCATGGGTATCTATGATGATTCTCCATAAAAGGTTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCGGGCATGATGGGCGGGCTTCTAACGGGCCTTTTAGCAGAGCCCACTCTTTGCGAACTATACCTACCGATCCCCGACAGCCGCGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAGCAGCTGACCGGAGCCATGTTCATAATCGGGTGGAACATCGTCTCCACCACCATTATTCTCCTCTTCATTCGGCTGTTTATGCCGTTGCGGATGCCGGACGAGGAACTCATGATCGGAGACGACGCCGTCCACGGCGAGGAAGCTTATGCCCTGTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCAATGCGGCGGCGAATGTGGAAGAAGGAACTTCCCCGCCTTATATCAATGGTGCCAGAGGAGTAACCATCACTTTATCCGTCGTAAACGATGGAGATTCTTTCTTTTGCGATTTTCGTAACGATGAGTGTCTGTATTTTAAAGGAAATGAACGGCGAACGAAGCTCATAATGGTGATATTAGTGGGCGCACCTGGAAGCGGAAAGTCCACCTTCTGCGAACTCGTAATGGCTTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCCGGAACCAAAGCACAGTGTCTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGATGCAATCTTGAAATAGAGCAGCGTTCTGAGTTTGTGAAACTAGGTAGCTCTCTAGTGGATGTACATGCTGTTGTATTGGATCTTCCTGCACAGCTCTGTATCTCCCGTTCGGTTAAGCGGACCGGTCATGAAGGGAACCTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCGAACCTGAATGAAGGGTTCAAGCGTATAACATTTTGTCACAGTGAAACGGACGTTCAATCCGCCATAGATACGTATAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAATGCAGACAAGAAAGTACAATTAGGCATAATGAGGTTCTTAAAGAAAGCAGAAAATCCTGCTAAAACATGTTCTAATGCCAATACCAATAAGGATTTTCCAAGTTCTCAAACTACCCAGGAAAAGAAAGAGTCTTCCTGCACGATGTTGAGCAATGTCAATAAAGAGTCGGAGAAAGGCGAAAATCCAGGCGTTGGATCCTTAGAAAACAATATTTCTGGAAGTGATCCTCCAACTCTTGCATTTCCTTCTATTTCAACATCGGATTTCAAGTTCAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGATGGTGGAGGAATTCATGGATAAGCTTGGGAATGCCAGACTTGTTATGGTAGACTTAAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCGGCCAAGAAAAATATTTGTTCCACCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAAGTCAGATGGTGGATTGCACTGCAATGTAATAGCCAATGCTGCAAACTGGCGATTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCCAGTCTGGAAGAGGCAACAAAACAACAAGCCAAGTCCCTTCGACCTGGCAATGTTGTGGCCGTTCAATTGCCTTCAACTTCTCCTTTGTTTAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCTCAAAGACCAAATTATCTCAACAATGATTATGATGAAGGTTGCAAGCTTCTTCGTGATGCTTATTCTTCTCTATTTCAAGCCTTTATTTCAATAGTAAAAGATGAGTTTAAGTCGGCGAAGGGAATTGACGAACGCCTCGGCTCAGCACCTTCAGAATCACGAAAACACTCTGAGGACACCCATCACAAGTTTAAGAGAGCGGAGTTGCAAATTCCTGAAAGAAGCAAAAAGTGGAAAGGAACTCAGGAATCAGCTGAAGCATTAAACCAAAACAACAATAAGATTTCCCACAAGATGAGTAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGTATCCCGAGAGACATGCCAATATTGTACTGGAGACATCAGATGATGTTGTAGTACTGAATGATATTTATCCAAAAGCACGCAAGCATCTTCTGATAGTGGCTCGATATGAAGGCCTCGATCAACTAGCTGATGTACATAAAGAACACCTTCCACTGTTGAAAACGATGCACGCCGTGGGTATGAAGTGGATTGATAAGTTCATTCATGACGATGCATCGTTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTATAAGCCAAGATTTTGACTCCAGTCATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCGGTCGACGTTATAGACGAAGTCAGTAGCCATGGAAAGGCAATCATCAAGGACGACGAGAGCTTGATGTCTATGGAGTTTCGTTGCAACAGATGCAGAAGTGCCCATCCCAACTTACCCAAGCTGAAAACACATATTTCCAAATGCCAATCGCCTTTCCCTTCCACGCTACTCGAGGGCGGTCGTTTAGTGAATGCTTCAGTTTTGATGGCCTCAGGAAGCCTTAGTTAA | 3858 | 47.05 | MVKRNESNSPFFTVNLLYATPLKNIQLLRLSTQFLQDRSNKFSLLMNNTAPPVDMATGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDQLIPLWGKGIPALEQSYLIDRANIPESGHVSHDGRVTPRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTIWGGGFLFQWGVIDYSGGFVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVMGGSIPWVSMMILHKRLSFLQKADDTLGVFHTHAVAGMMGGLLTGLLAEPTLCELYLPIPDSRGAFYGKNGGVQFLKQLTGAMFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANVEEGTSPPYINGARGVTITLSVVNDGDSFFCDFRNDECLYFKGNERRTKLIMVILVGAPGSGKSTFCELVMASSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLEIEQRSEFVKLGSSLVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPNLNEGFKRITFCHSETDVQSAIDTYKSLGLHDALPDGCFGQKNADKKVQLGIMRFLKKAENPAKTCSNANTNKDFPSSQTTQEKKESSCTMLSNVNKESEKGENPGVGSLENNISGSDPPTLAFPSISTSDFKFSHEKAAEIIVEMVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNICSTKFFTFVGDITKLKSDGGLHCNVIANAANWRLKPGGGGVNAAIFSAAGPSLEEATKQQAKSLRPGNVVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQAFISIVKDEFKSAKGIDERLGSAPSESRKHSEDTHHKFKRAELQIPERSKKWKGTQESAEALNQNNNKISHKMSKHWGSWAQALYNTAMYPERHANIVLETSDDVVVLNDIYPKARKHLLIVARYEGLDQLADVHKEHLPLLKTMHAVGMKWIDKFIHDDASLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKAIIKDDESLMSMEFRCNRCRSAHPNLPKLKTHISKCQSPFPSTLLEGGRLVNASVLMASGSLS | 1285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1128381 | 1135118 | + | CmoCh06G002090.1 | Cmo06g00209 | 383771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00209 | 1285 | ProSitePatterns | HIT domain signature. | 1167 | 1185 | IPR019808 | - | |
Cmo06g00209 | 1285 | MobiDBLite | consensus disorder prediction | 759 | 811 | - | - | |
Cmo06g00209 | 1285 | Pfam | Macro domain | 903 | 987 | IPR002589 | - | |
Cmo06g00209 | 1285 | MobiDBLite | consensus disorder prediction | 1019 | 1038 | - | - | |
Cmo06g00209 | 1285 | ProSiteProfiles | HIT domain profile. | 1085 | 1193 | IPR011146 | GO:0003824 | |
Cmo06g00209 | 1285 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 804 | 869 | IPR043472 | - | |
Cmo06g00209 | 1285 | SUPERFAMILY | HIT-like | 1069 | 1242 | IPR036265 | - | |
Cmo06g00209 | 1285 | Gene3D | - | 552 | 720 | IPR027417 | - | |
Cmo06g00209 | 1285 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 1087 | 1198 | - | - | |
Cmo06g00209 | 1285 | Pfam | Ammonium Transporter Family | 70 | 492 | IPR024041 | GO:0008519|GO:0016020|GO:0072488 | |
Cmo06g00209 | 1285 | ProSiteProfiles | Macro domain profile. | 868 | 1121 | IPR002589 | - | |
Cmo06g00209 | 1285 | SMART | YBR022w_8 | 880 | 1054 | IPR002589 | - | |
Cmo06g00209 | 1285 | TIGRFAM | amt: ammonium transporter | 67 | 492 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Cmo06g00209 | 1285 | Gene3D | - | 1080 | 1261 | IPR036265 | - | |
Cmo06g00209 | 1285 | PANTHER | AMMONIUM TRANSPORTER 2 | 56 | 529 | - | - | |
Cmo06g00209 | 1285 | ProSitePatterns | Ammonium transporters signature. | 237 | 262 | IPR018047 | GO:0008519|GO:0016020|GO:0072488 | |
Cmo06g00209 | 1285 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 56 | 529 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Cmo06g00209 | 1285 | Gene3D | Ammonium transporter AmtB like domains | 45 | 495 | IPR029020 | - | |
Cmo06g00209 | 1285 | SUPERFAMILY | Ammonium transporter | 62 | 474 | - | - | |
Cmo06g00209 | 1285 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 564 | 707 | IPR027417 | - | |
Cmo06g00209 | 1285 | SUPERFAMILY | Macro domain-like | 862 | 1001 | IPR043472 | - | |
Cmo06g00209 | 1285 | Pfam | AAA domain | 564 | 686 | - | - | |
Cmo06g00209 | 1285 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 1203 | 1257 | IPR032566 | - | |
Cmo06g00209 | 1285 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 870 | 1011 | IPR043472 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00209 | Cmo-Chr6:1128381 | Cmo12g00985 | Cmo-Chr12:9210128 | 1.21E-19 | dispersed | |
Cmo03g00674 | Cmo-Chr3:5981770 | Cmo06g00209 | Cmo-Chr6:1128381 | 8.57E-170 | transposed | |
Cmo05g00418 | Cmo-Chr5:1926187 | Cmo06g00209 | Cmo-Chr6:1128381 | 4.42E-179 | transposed | |
Cmo14g00042 | Cmo-Chr14:211056 | Cmo06g00209 | Cmo-Chr6:1128381 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00209 | K10863 | - | csv:101216867 | 1210.67 |