Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00219 ATGGAAGGCCACAATCCCCATCCCCTTGTTCATCTCCACCTTCAGCAGCAGCAGCAGCAACAGCAACAGCTTCAACATCCTCCGCCGCCACCGCCGCCGCAGCAGCAACATCTCCACCAAAACCTCGCCGATCAAACCGCCGTCAACGCCGTCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTAATGATCCGCGCCGAGCTGGATCAACGGTTCATGGAGACCAAACGCAACAAACTCTTGTGGGAAATCACCGCCGCCAAAATGAAAGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTCACCCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGCTACAAGCAATTTTCGGGGCACGAATGCATCGAATATTATGGGCGGAGGCGGAGAGCGGAGGGAGTGGATCGAAGAAGAAGACGACGGTGTTATCGTCGGATGAAGATGACGAGAACGAGGACAGTGATGGGGACGGAGGCGACACGAAAGCGAGCGGTAGGAAGAGTAAGAAGAAGGGTAAAGGTAACGCCGGGGGAAGTAGTAGTATCAATCATTTGAAGGAAATTTTAGAAGATTTCATGAACCAACAAATTCAAATGGAGATTCAATGGAGGGAAGCGTTTGAATCAAGGGAAAAAGAGAGACAAATTAGGGAAATGGAATGGAGAAGGAAAATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGAAGAATGAGAGATGAAGTTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATATAG 900 46.33 MEGHNPHPLVHLHLQQQQQQQQQLQHPPPPPPPQQQHLHQNLADQTAVNAVADRFPQWSIQETKEFLMIRAELDQRFMETKRNKLLWEITAAKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMHRILWAEAESGGSGSKKKTTVLSSDEDDENEDSDGDGGDTKASGRKSKKKGKGNAGGSSSINHLKEILEDFMNQQIQMEIQWREAFESREKERQIREMEWRRKMEALEHERIMLERRWREREEQRRMRDEVRAEKRDALITALLNKLRRDDHI 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1181729 1183078 - CmoCh06G002190.1 Cmo06g00219 383781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00219 299 MobiDBLite consensus disorder prediction 155 207 - -
Cmo06g00219 299 CDD GT1 56 121 - -
Cmo06g00219 299 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 34 296 - -
Cmo06g00219 299 MobiDBLite consensus disorder prediction 13 37 - -
Cmo06g00219 299 Gene3D - 58 119 - -
Cmo06g00219 299 Pfam Myb/SANT-like DNA-binding domain 57 141 IPR044822 -
Cmo06g00219 299 Coils Coil 243 270 - -
Cmo06g00219 299 ProSiteProfiles Myb-like domain profile. 58 114 IPR001005 -
Cmo06g00219 299 PANTHER - 34 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00359 Cmo06g00219 CCT
Cmo06g00219 Cmo14g00054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00075 Cmo-Chr5:292932 Cmo06g00219 Cmo-Chr6:1181729 1.89E-12 dispersed
Cmo06g00219 Cmo-Chr6:1181729 Cmo14g00274 Cmo-Chr14:1239386 1.02E-12 dispersed
Cmo04g00623 Cmo-Chr4:3097281 Cmo06g00219 Cmo-Chr6:1181729 1.86E-39 transposed
Cmo14g00054 Cmo-Chr14:270457 Cmo06g00219 Cmo-Chr6:1181729 1.28E-116 wgd
Cmo03g00359 Cmo-Chr3:4567499 Cmo06g00219 Cmo-Chr6:1181729 3.29E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9906 PF13837 Myb_DNA-bind_4 8.20E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00219 - - csv:101211490 399.053