Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00219 | ATGGAAGGCCACAATCCCCATCCCCTTGTTCATCTCCACCTTCAGCAGCAGCAGCAGCAACAGCAACAGCTTCAACATCCTCCGCCGCCACCGCCGCCGCAGCAGCAACATCTCCACCAAAACCTCGCCGATCAAACCGCCGTCAACGCCGTCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTAATGATCCGCGCCGAGCTGGATCAACGGTTCATGGAGACCAAACGCAACAAACTCTTGTGGGAAATCACCGCCGCCAAAATGAAAGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTCACCCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGCTACAAGCAATTTTCGGGGCACGAATGCATCGAATATTATGGGCGGAGGCGGAGAGCGGAGGGAGTGGATCGAAGAAGAAGACGACGGTGTTATCGTCGGATGAAGATGACGAGAACGAGGACAGTGATGGGGACGGAGGCGACACGAAAGCGAGCGGTAGGAAGAGTAAGAAGAAGGGTAAAGGTAACGCCGGGGGAAGTAGTAGTATCAATCATTTGAAGGAAATTTTAGAAGATTTCATGAACCAACAAATTCAAATGGAGATTCAATGGAGGGAAGCGTTTGAATCAAGGGAAAAAGAGAGACAAATTAGGGAAATGGAATGGAGAAGGAAAATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGAAGAATGAGAGATGAAGTTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATATAG | 900 | 46.33 | MEGHNPHPLVHLHLQQQQQQQQQLQHPPPPPPPQQQHLHQNLADQTAVNAVADRFPQWSIQETKEFLMIRAELDQRFMETKRNKLLWEITAAKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMHRILWAEAESGGSGSKKKTTVLSSDEDDENEDSDGDGGDTKASGRKSKKKGKGNAGGSSSINHLKEILEDFMNQQIQMEIQWREAFESREKERQIREMEWRRKMEALEHERIMLERRWREREEQRRMRDEVRAEKRDALITALLNKLRRDDHI | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1181729 | 1183078 | - | CmoCh06G002190.1 | Cmo06g00219 | 383781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00219 | 299 | MobiDBLite | consensus disorder prediction | 155 | 207 | - | - | |
Cmo06g00219 | 299 | CDD | GT1 | 56 | 121 | - | - | |
Cmo06g00219 | 299 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 34 | 296 | - | - | |
Cmo06g00219 | 299 | MobiDBLite | consensus disorder prediction | 13 | 37 | - | - | |
Cmo06g00219 | 299 | Gene3D | - | 58 | 119 | - | - | |
Cmo06g00219 | 299 | Pfam | Myb/SANT-like DNA-binding domain | 57 | 141 | IPR044822 | - | |
Cmo06g00219 | 299 | Coils | Coil | 243 | 270 | - | - | |
Cmo06g00219 | 299 | ProSiteProfiles | Myb-like domain profile. | 58 | 114 | IPR001005 | - | |
Cmo06g00219 | 299 | PANTHER | - | 34 | 296 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00359 | Cmo06g00219 | CCT | |
Cmo06g00219 | Cmo14g00054 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00075 | Cmo-Chr5:292932 | Cmo06g00219 | Cmo-Chr6:1181729 | 1.89E-12 | dispersed | |
Cmo06g00219 | Cmo-Chr6:1181729 | Cmo14g00274 | Cmo-Chr14:1239386 | 1.02E-12 | dispersed | |
Cmo04g00623 | Cmo-Chr4:3097281 | Cmo06g00219 | Cmo-Chr6:1181729 | 1.86E-39 | transposed | |
Cmo14g00054 | Cmo-Chr14:270457 | Cmo06g00219 | Cmo-Chr6:1181729 | 1.28E-116 | wgd | |
Cmo03g00359 | Cmo-Chr3:4567499 | Cmo06g00219 | Cmo-Chr6:1181729 | 3.29E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9906 | PF13837 | Myb_DNA-bind_4 | 8.20E-19 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00219 | - | - | csv:101211490 | 399.053 |