Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00221 | ATGGAAATGCCATCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTATGCCGGTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTTTACGGCCTTTGTGATCCAGGTAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTCGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGGGATGGCATGAACAGAAAAGATTGGCTGTCTCTAGTGGCTGTACATAGTGATTCCTGGTTGCTCTCGGTGGCTTTCTATCTTGGATCAAGGCTTAAGCAAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAATGGAAGCCTGTCAAAGAGAAACCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCTAATGATGGGCAGGTGAAAAGCCATCCTAAACTTGCCAAACAGAGTATCGAGGAGGATGTCGACGAACATAGCAAAACCCTCTGTGGTAGCTGTGGTGAAAACAGTACAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCATGGAAAGTGCGTAAACATAACACCTGCTAAGGCTGATTGTATCCAACGATACAAATGTTCATTTTGCTGCATGAAGAAATGCAGGCAGTAG | 720 | 45.56 | MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPGKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGSRLKQNERKRLFSLMNDLPTVFEVVTEWKPVKEKPSVDSGSRSQGSAKRSNDGQVKSHPKLAKQSIEEDVDEHSKTLCGSCGENSTDEFWIGCDICERWYHGKCVNITPAKADCIQRYKCSFCCMKKCRQ | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1192609 | 1195026 | - | CmoCh06G002210.1 | Cmo06g00221 | 383783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00221 | 239 | MobiDBLite | consensus disorder prediction | 146 | 161 | - | - | |
Cmo06g00221 | 239 | PANTHER | CPG BINDING PROTEIN | 5 | 239 | IPR045104 | GO:0006355|GO:0042393 | |
Cmo06g00221 | 239 | MobiDBLite | consensus disorder prediction | 162 | 177 | - | - | |
Cmo06g00221 | 239 | CDD | PHD_AL_plant | 186 | 235 | IPR044104 | - | |
Cmo06g00221 | 239 | MobiDBLite | consensus disorder prediction | 142 | 177 | - | - | |
Cmo06g00221 | 239 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 235 | IPR019787 | - | |
Cmo06g00221 | 239 | Pfam | PHD-finger | 187 | 233 | IPR019787 | - | |
Cmo06g00221 | 239 | SMART | PHD_3 | 186 | 233 | IPR001965 | - | |
Cmo06g00221 | 239 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 232 | IPR019786 | - | |
Cmo06g00221 | 239 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE | 5 | 239 | - | - | |
Cmo06g00221 | 239 | SUPERFAMILY | FYVE/PHD zinc finger | 175 | 236 | IPR011011 | - | |
Cmo06g00221 | 239 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
Cmo06g00221 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 233 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00221 | Cmo14g00058 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00221 | Cmo-Chr6:1192609 | Cmo08g00755 | Cmo-Chr8:4772591 | 3.43E-89 | dispersed | |
Cmo14g00058 | Cmo-Chr14:290148 | Cmo06g00221 | Cmo-Chr6:1192609 | 1.06E-148 | wgd | |
Cmo04g01181 | Cmo-Chr4:6039376 | Cmo06g00221 | Cmo-Chr6:1192609 | 1.52E-110 | wgd | |
Cmo04g00150 | Cmo-Chr4:788242 | Cmo06g00221 | Cmo-Chr6:1192609 | 7.51E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9907 | PF12165 | Alfin | 2.10E-65 | No_clan | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00221 | - | - | csv:101211970 | 426.017 |