Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00221 ATGGAAATGCCATCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTATGCCGGTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTTTACGGCCTTTGTGATCCAGGTAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTCGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGGGATGGCATGAACAGAAAAGATTGGCTGTCTCTAGTGGCTGTACATAGTGATTCCTGGTTGCTCTCGGTGGCTTTCTATCTTGGATCAAGGCTTAAGCAAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAATGGAAGCCTGTCAAAGAGAAACCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCTAATGATGGGCAGGTGAAAAGCCATCCTAAACTTGCCAAACAGAGTATCGAGGAGGATGTCGACGAACATAGCAAAACCCTCTGTGGTAGCTGTGGTGAAAACAGTACAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCATGGAAAGTGCGTAAACATAACACCTGCTAAGGCTGATTGTATCCAACGATACAAATGTTCATTTTGCTGCATGAAGAAATGCAGGCAGTAG 720 45.56 MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPGKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGSRLKQNERKRLFSLMNDLPTVFEVVTEWKPVKEKPSVDSGSRSQGSAKRSNDGQVKSHPKLAKQSIEEDVDEHSKTLCGSCGENSTDEFWIGCDICERWYHGKCVNITPAKADCIQRYKCSFCCMKKCRQ 239
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1192609 1195026 - CmoCh06G002210.1 Cmo06g00221 383783
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00221 239 MobiDBLite consensus disorder prediction 146 161 - -
Cmo06g00221 239 PANTHER CPG BINDING PROTEIN 5 239 IPR045104 GO:0006355|GO:0042393
Cmo06g00221 239 MobiDBLite consensus disorder prediction 162 177 - -
Cmo06g00221 239 CDD PHD_AL_plant 186 235 IPR044104 -
Cmo06g00221 239 MobiDBLite consensus disorder prediction 142 177 - -
Cmo06g00221 239 ProSiteProfiles Zinc finger PHD-type profile. 184 235 IPR019787 -
Cmo06g00221 239 Pfam PHD-finger 187 233 IPR019787 -
Cmo06g00221 239 SMART PHD_3 186 233 IPR001965 -
Cmo06g00221 239 ProSitePatterns Zinc finger PHD-type signature. 187 232 IPR019786 -
Cmo06g00221 239 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 5 239 - -
Cmo06g00221 239 SUPERFAMILY FYVE/PHD zinc finger 175 236 IPR011011 -
Cmo06g00221 239 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cmo06g00221 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 233 IPR013083 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo06g00221 Cmo14g00058 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00221 Cmo-Chr6:1192609 Cmo08g00755 Cmo-Chr8:4772591 3.43E-89 dispersed
Cmo14g00058 Cmo-Chr14:290148 Cmo06g00221 Cmo-Chr6:1192609 1.06E-148 wgd
Cmo04g01181 Cmo-Chr4:6039376 Cmo06g00221 Cmo-Chr6:1192609 1.52E-110 wgd
Cmo04g00150 Cmo-Chr4:788242 Cmo06g00221 Cmo-Chr6:1192609 7.51E-113 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9907 PF12165 Alfin 2.10E-65 No_clan Cmo TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00221 - - csv:101211970 426.017