Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00224 ATGGATTTCGAACAAGAAACGCCGATCTTGCAAAACGGCGCCGTCAAGAGTTCGCTGATCGGTCGGACGGCTCACAACATGTCGTCGTCATCGCTGCGGAGAAAGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGGTTGTCTTAGGCTGTTGCTTGTGAATCTTCAAGAGGTCATTTTGGGAACGAAGATTTGGTTTCTTTTTCCGGCGATTCCGTTGGCTGTGTTGGCCGACTCTCTTGGCTTCGGACGAGCGTGGGTTTTCGTTCTGAGCCTATTGGGGCTTGCTCCACTTGCGGAACGCCTGAGCTTTCTGACGGAACAAATCTCATATTTCACCGGCCCCACAATTGGTGGGTTATTAAATGCGACATGTGGCAATGCGACGGAGCTAATTATAGCAATATTTGCACTTAGCAAGGATAAAATCGAGTTGGTGAAGTACTCTCTTTTGGGATCGGTTCTATCAAACCTTCTGCTCGTTCTTGGAACCTCGCTTTTCATCGGTGGCATCGTCAACCTTAAAAGACAACAAACCTATGACCAAAGACAAGCTGAGGTCAATTCACACATGTTGTTGTTGGCGCTTGTATGTCATTTGCTTCCAATGTTGTTCCCTTATGTCAGAGGGTCTACTGATGTGGTTGTAGCTGAAGCACTGCGATTGTCTAGAGCAAGTAGTATAGTAATGTTGGTGGCTTATGTAGCTTACTTGATCTTTCAACTATGGACTCACTGTGAATTTTTTGAACCCGATAAGGAACTAGAGGTATACAACGACGACGTTGTGCAAGAAGCACCAACGATTGGAATATGGAGCATAGTGGCTTGGTTGGGAGGCGTTACTATTCTCATTGCTTTGTTGTCGGAGTACGTGGTGGCTACAATTGAGGACGTTTCGGAAAGTTGGGGGCTATCGGTTGCATTCCTTAGCATGATATTACTACCACTGGTTGGAAATGCAGCCGAGCACGCAGGAGCTCTCATATTTGCTTATAAGAACAAGTTGGATATAACTTTAGGTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCGTTATGCGTAATTGTCGGTTGGATTATGGGAATTAATATGGATCTTAATTTTAATGTTCTTGAAACTGCCTCCCTTGCTCTTTCAATAATGGCCTCATCATCCATTTTACAGGATGGCAGTTCTCATTACATGAAGGGGTTGATTCTCATCCTCTTCTATATTATCATTGCAATATGTTTCTTCTTCACTAGTGATGAGGTTATTATCGTCCATTCCCAATTATCGAGAGTCCAGTTAAAGCCATAG 1317 44.19 MDFEQETPILQNGAVKSSLIGRTAHNMSSSSLRRKSDLTLVSKVRFGCLRLLLVNLQEVILGTKIWFLFPAIPLAVLADSLGFGRAWVFVLSLLGLAPLAERLSFLTEQISYFTGPTIGGLLNATCGNATELIIAIFALSKDKIELVKYSLLGSVLSNLLLVLGTSLFIGGIVNLKRQQTYDQRQAEVNSHMLLLALVCHLLPMLFPYVRGSTDVVVAEALRLSRASSIVMLVAYVAYLIFQLWTHCEFFEPDKELEVYNDDVVQEAPTIGIWSIVAWLGGVTILIALLSEYVVATIEDVSESWGLSVAFLSMILLPLVGNAAEHAGALIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVGWIMGINMDLNFNVLETASLALSIMASSSILQDGSSHYMKGLILILFYIIIAICFFFTSDEVIIVHSQLSRVQLKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1201700 1204213 + CmoCh06G002240.1 Cmo06g00224 383786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00224 438 Pfam Sodium/calcium exchanger protein 86 244 IPR004837 GO:0016021|GO:0055085
Cmo06g00224 438 Pfam Sodium/calcium exchanger protein 276 416 IPR004837 GO:0016021|GO:0055085
Cmo06g00224 438 TIGRFAM cax: calcium/proton exchanger 70 418 IPR004798 GO:0006816|GO:0015369
Cmo06g00224 438 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 19 423 - -
Cmo06g00224 438 TIGRFAM caca2: calcium/proton exchanger 52 418 - -
Cmo06g00224 438 Gene3D - 116 419 IPR044880 -
Cmo06g00224 438 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 423 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00224 Cmo07g01105 CCT
Cmo03g00362 Cmo06g00224 CCT
Cmo06g00224 Cmo07g01105 ECH
Cmo03g00362 Cmo06g00224 ECH
Cmo06g00224 Cmo14g00062 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00224 Cmo-Chr6:1201700 Cmo20g00692 Cmo-Chr20:3416859 2.25E-112 dispersed
Cmo01g00693 Cmo-Chr1:3540076 Cmo06g00224 Cmo-Chr6:1201700 9.87E-19 transposed
Cmo01g00692 Cmo-Chr1:3536729 Cmo06g00224 Cmo-Chr6:1201700 1.86E-63 wgd
Cmo03g00362 Cmo-Chr3:4609713 Cmo06g00224 Cmo-Chr6:1201700 0 wgd
Cmo06g00224 Cmo-Chr6:1201700 Cmo07g01105 Cmo-Chr7:5785240 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00224 K07300 - csv:101213176 609.372