Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00226 | ATGGGGAACACTCGCAGCAATGTGAAGCGGATTCTGTGTATATTTTTGTATAATATCTTTCAGATGTCTATGATATCAGGTTTGGCAAAATACACACCAACCTCTGGAAATGAATCGGATCGCTTGGCTCTACTTGACTTCAAAAGTAAAGTATTCAACGACCCACTTGGAATCATGAGTGCTTGGAACGATTCCATGCATTTTTGCGATTGGGTTGGCGTTTCTTGCGATCAAAGCATCAGAAGAGTAGTGGGTTTGAGCTTGGAAGCTCGAAAGCTGAGTGGTTCGATACCACCTTCTCTGGGTAATCTTACTTATCTCACTGAAATCAGATTGGGAGACAACAACTTGCATGGCCAAATTCCCCAAGAGTTTGGTCGACTGCTACGATTGCGTCATCTCAATTTGTCTTTTAATAACTTCAGTGGTGAGATTCCAGTGAATATAAGTCATTGCACTGAGCTGGTTGTTCTGACAATTGGTGCCAATAGGCTTGAAGGTCAAATTCCATCCCAATTCTTCACGTTAACCAAGTTGGAGCTTCTCGGGTTTGGTGTCAACAATTTGACTGGAACTATCCCACCTTGGATAGGTAATTTTTCTTCAATGCTTCGTTTGTCATTCGCAAAGAACAACTTTCGAGGAGACATTCCCAATGGAGTTGGACGTCTGCATAGATTGAAATTCTTCTCAGTTTATGGAAACTACTTCACAGGGTCAGTGCCGCTTTCAATCTATAATATAACTTCTTTGAATTATTTTTCTGTTACTCAGAATCGATTGCAAGTCCTAGTACCACCAAATAACGGATTTTCTCTTCCCAATCTTCAGATCTTTTATGGTGCTATCAACAATTTCAACGGGCCTATTCCCGCGTTTTTTGCGAATGCCTCAAGTCTTCAAGAAATAGATCTTTCTGAGAATAATTTCACTGGTAAAATACCTGAGGACTTGGGGAACTTAAACGACTTGGTGTTACTAAATTTTGATGACAATAGACTTGGAACTGGGAAAGTTGGTGACTTAAGTTTTATCAGTTCCTTGACTAATTGTACCAGTCTAAGCATACTGGGTGCTGCTGGGAATCATTTTGGTGGAGTATTGCCTCCATCTATTACCAACTTGTCAGACCAATTCACAAGCCTAACCTTAGGTGAAAATATGTTAAGTGGAGGCCTTCCAGTAGGGATTGAAAACTTGATTAACTTGCAGGTTTTCACTGTGGAAAATAACTACTTGAATGGTAGTGTCCCTCTCAATGTTGGTAAGCTTCAAAACTTGGCCAAATTGTATTTGCAAGGTAACAAACTAAGTGGGCCAATTCCATCATCCATTGGTAACTTGTCCTTGATCATCGAGCTTCGTTTGAATGATAACGAACTTGATGGAAGTATACCACCAAGCTTAGGACGATGCAAAAGACTTCAAGCTCTTGACCTATCTAATAATAAGCTAAGTGGTACCATACCCGAGGAAGTTCTCAGTCTCCCTTCCCTTTCACTCTTTTTGGCCTTGGCTCAGAACTCACTTACTGGTCCATTACCAGCTCAAGTGGGAGAATTAATTAGTTTATCTGAGTTGGATCTGTCAGAGAACATGTTATCAGGAAATATTCCCGAAGACCTTGGTAAATGTATTGGCCTGATTCATTTGTTTTTGGATCATAACCTATTTGAGGGAACAATTCCTCAATCTTTGGAAGCTTTGAAAGGTCTAGAAGCACTTGATCTTTCAAGCAACAACTTGTCTGGGCCAATTCCCCAATTTCTTGACCAGTTTCTCTCACTCAAGTATCTCAATCTATCCTATAATGACCTATGTGGTGGTTTGCAACACTTGCATTTACCTCCATGCATGCCTAACCCAACACATTCATCCAACAAATTTCTGACAAAAAAAGTGTTAGCCTGTACAATATCTACAGTCGCATCTGCCATTATTATTTTGAGCATCCTTCTTGTGTGTTTAATGCTTAAGAAGTCGAGGAAGAATGCTTTGAATTCATCTTCCAACTCCAAGGATTTTGTATTGCAAGTTTCTTACTTACAACTCAGTAGATCAACTAATGGGTTCTCTAGAGACAATTTGATTGGTTCAGGTAGTTTTGGTTCTGTGTATAAAGGTTCTCTGTCAAATGATGGATTGATTGTTGCAATCAAAGTTGTAAACCTCCAACAAGAAGGTGCTTCCAAAAGTTTTGTTGATGAATGCAAAACTCTCGCAAATATACGACATCGAAATCTACTAAAGATCATAGCTTCTGTCTCGAGCATCGATGGACAAGGCAATGAGTTTAAAGCTCTAGTTTTCGATTTCATGTCGAACGGTAACCTGGATCATTGGCTTCACCCTACAAATCAAGGGGAGAATCAAAGAAGGCTGAGTCTTATCCAGAGACTGAATATTGCCATTGATATTGCTTGTGCATTAGATTATCTTCACAATCATTGCGAAACACCTATTGTTCACTGTGATCTAAAGCCTAGCAATGTATTGCTGGACGATGATATGGTAGCCCATGTAGGGGACTTTGGTTTAGCAAGATTCATGTTGGAAGGCTCAAATGATCAATCATCTTTCAGCCAAACCATGTCACATGCGCTTAAGGGGTCGATCGGGTATATCCCTCCAGAGTATGCCACTGGGGGTAGAGTTTCCAGTGAAGGAGATATTTTCAGCTACGGAATACTACTATTGGAGATGATCATTGGAAAAAGACCCACAGACAGCACGTTTCACAGTGGCGTAGATATTCACATGTTCACTTCAATGGCATTGTCTCATGGAGCGTTGGCCATAATTGACCCTTATTTGCTATATGAAGAAAGACGTTGTCAAGAAGAAGAGAAGGAAGACAGAATACAAGAAATAGCAATAATGATGGGTGAAGATAATCATGGTAGAGAAACTGTACCAAGATGGATGGAGGAATGTGTAGTTTCAATAATGAGAATTGGGTTATCATGCTCTTCAACTGTGCCTCGAGAAAGAACGTCCATGAATATGGTTGTTGACGAATTGCAGAAAATAAGAAGCTCCTATCTCAAGTTTAAGAAGGCACAAACACAAGGATCAGTCGATATTTGTTCCCCCAACCTTGAGAGACAGAATGATTGTGTTTTGGCCGCAATGGGTTCCTGA | 3141 | 40.21 | MGNTRSNVKRILCIFLYNIFQMSMISGLAKYTPTSGNESDRLALLDFKSKVFNDPLGIMSAWNDSMHFCDWVGVSCDQSIRRVVGLSLEARKLSGSIPPSLGNLTYLTEIRLGDNNLHGQIPQEFGRLLRLRHLNLSFNNFSGEIPVNISHCTELVVLTIGANRLEGQIPSQFFTLTKLELLGFGVNNLTGTIPPWIGNFSSMLRLSFAKNNFRGDIPNGVGRLHRLKFFSVYGNYFTGSVPLSIYNITSLNYFSVTQNRLQVLVPPNNGFSLPNLQIFYGAINNFNGPIPAFFANASSLQEIDLSENNFTGKIPEDLGNLNDLVLLNFDDNRLGTGKVGDLSFISSLTNCTSLSILGAAGNHFGGVLPPSITNLSDQFTSLTLGENMLSGGLPVGIENLINLQVFTVENNYLNGSVPLNVGKLQNLAKLYLQGNKLSGPIPSSIGNLSLIIELRLNDNELDGSIPPSLGRCKRLQALDLSNNKLSGTIPEEVLSLPSLSLFLALAQNSLTGPLPAQVGELISLSELDLSENMLSGNIPEDLGKCIGLIHLFLDHNLFEGTIPQSLEALKGLEALDLSSNNLSGPIPQFLDQFLSLKYLNLSYNDLCGGLQHLHLPPCMPNPTHSSNKFLTKKVLACTISTVASAIIILSILLVCLMLKKSRKNALNSSSNSKDFVLQVSYLQLSRSTNGFSRDNLIGSGSFGSVYKGSLSNDGLIVAIKVVNLQQEGASKSFVDECKTLANIRHRNLLKIIASVSSIDGQGNEFKALVFDFMSNGNLDHWLHPTNQGENQRRLSLIQRLNIAIDIACALDYLHNHCETPIVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSHALKGSIGYIPPEYATGGRVSSEGDIFSYGILLLEMIIGKRPTDSTFHSGVDIHMFTSMALSHGALAIIDPYLLYEERRCQEEEKEDRIQEIAIMMGEDNHGRETVPRWMEECVVSIMRIGLSCSSTVPRERTSMNMVVDELQKIRSSYLKFKKAQTQGSVDICSPNLERQNDCVLAAMGS | 1046 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1209136 | 1212800 | - | CmoCh06G002260.1 | Cmo06g00226 | 383788 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00226 | 1046 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 34 | 1011 | - | - | |
| Cmo06g00226 | 1046 | Gene3D | Phosphorylase Kinase; domain 1 | 653 | 772 | - | - | |
| Cmo06g00226 | 1046 | PRINTS | Leucine-rich repeat signature | 569 | 582 | - | - | |
| Cmo06g00226 | 1046 | PRINTS | Leucine-rich repeat signature | 475 | 488 | - | - | |
| Cmo06g00226 | 1046 | Gene3D | Ribonuclease Inhibitor | 266 | 341 | IPR032675 | - | |
| Cmo06g00226 | 1046 | SMART | LRR_typ_2 | 424 | 448 | IPR003591 | - | |
| Cmo06g00226 | 1046 | SMART | LRR_typ_2 | 521 | 545 | IPR003591 | - | |
| Cmo06g00226 | 1046 | SMART | LRR_typ_2 | 128 | 152 | IPR003591 | - | |
| Cmo06g00226 | 1046 | SMART | LRR_typ_2 | 472 | 496 | IPR003591 | - | |
| Cmo06g00226 | 1046 | SMART | LRR_typ_2 | 569 | 597 | IPR003591 | - | |
| Cmo06g00226 | 1046 | Gene3D | Ribonuclease Inhibitor | 37 | 190 | IPR032675 | - | |
| Cmo06g00226 | 1046 | ProSiteProfiles | Protein kinase domain profile. | 691 | 1015 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo06g00226 | 1046 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED | 34 | 1011 | - | - | |
| Cmo06g00226 | 1046 | ProSitePatterns | Protein kinases ATP-binding region signature. | 697 | 720 | IPR017441 | GO:0005524 | |
| Cmo06g00226 | 1046 | Pfam | Protein kinase domain | 692 | 917 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo06g00226 | 1046 | Gene3D | Transferase(Phosphotransferase) domain 1 | 773 | 1030 | - | - | |
| Cmo06g00226 | 1046 | SMART | serkin_6 | 691 | 958 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo06g00226 | 1046 | Gene3D | Ribonuclease Inhibitor | 342 | 641 | IPR032675 | - | |
| Cmo06g00226 | 1046 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 821 | 833 | IPR008271 | GO:0004672|GO:0006468 | |
| Cmo06g00226 | 1046 | Gene3D | Ribonuclease Inhibitor | 191 | 265 | IPR032675 | - | |
| Cmo06g00226 | 1046 | SUPERFAMILY | Protein kinase-like (PK-like) | 668 | 1007 | IPR011009 | - | |
| Cmo06g00226 | 1046 | Pfam | Leucine rich repeat | 426 | 485 | IPR001611 | GO:0005515 | |
| Cmo06g00226 | 1046 | Pfam | Leucine rich repeat | 549 | 606 | IPR001611 | GO:0005515 | |
| Cmo06g00226 | 1046 | Pfam | Leucine rich repeat N-terminal domain | 38 | 77 | IPR013210 | - | |
| Cmo06g00226 | 1046 | SUPERFAMILY | RNI-like | 267 | 625 | - | - | |
| Cmo06g00226 | 1046 | SUPERFAMILY | L domain-like | 37 | 334 | - | - | |
| Cmo06g00226 | 1046 | Pfam | Leucine Rich Repeat | 130 | 152 | IPR001611 | GO:0005515 | |
| Cmo06g00226 | 1046 | Pfam | Leucine Rich Repeat | 299 | 321 | IPR001611 | GO:0005515 | |
| Cmo06g00226 | 1046 | CDD | STKc_IRAK | 697 | 1010 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00226 | Cmo-Chr6:1209136 | Cmo14g00067 | Cmo-Chr14:336178 | 0 | dispersed | |
| Cmo14g00066 | Cmo-Chr14:332033 | Cmo06g00226 | Cmo-Chr6:1209136 | 0 | wgd | |
| Cmo15g00144 | Cmo-Chr15:661503 | Cmo06g00226 | Cmo-Chr6:1209136 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 74393 | PF00069 | Pkinase | 5.20E-41 | CL0016 | Cmo | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00226 | - | - | cpep:111800314 | 1801.95 |