Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00230 ATGGAAGGGAGAGACGAAGATGTGAGAGTTGGAGCCAACAGGTTCGAGGAGAGGCAGCCGATTGGGACGGCAGCTCAGACCCAAAATGCGGCAAAGGACTACCGAGAGCCGGCGCCGGCGCCGCTGGTTGAGGCGGGGGAGCTAAGGTCATGGTCGTTCTACAGAGCTGGAATTGCAGAGTTTGTAGCCACTTTCCTGTTCCTTTATGTCACTATTTTGACAGTAATGGGAATCGCCAAATCTCCCAATAAGTGCAACACTGTTGGCGTCCAAGGCATTGCTTGGGCCTTTGGCGGCATGATCTTTGCTCTTGTTTATTGCACCGCTGGTATTTCAGGTACCCACGTCCACTCATTTAAATAA 363 52.07 MEGRDEDVRVGANRFEERQPIGTAAQTQNAAKDYREPAPAPLVEAGELRSWSFYRAGIAEFVATFLFLYVTILTVMGIAKSPNKCNTVGVQGIAWAFGGMIFALVYCTAGISGTHVHSFK 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1232789 1234265 + CmoCh06G002300.1 Cmo06g00230 383792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00230 120 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 117 IPR034294 -
Cmo06g00230 120 SUPERFAMILY Aquaporin-like 47 116 IPR023271 -
Cmo06g00230 120 Pfam Major intrinsic protein 47 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00230 120 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00230 120 PRINTS Major intrinsic protein family signature 97 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00230 120 PANTHER AQUAPORIN PIP1-2 ISOFORM X2 1 117 - -
Cmo06g00230 120 Gene3D Glycerol uptake facilitator protein. 40 118 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00230 Cmo-Chr6:1232789 Cmo02g01479 Cmo-Chr2:8662590 4.95E-60 dispersed
Cmo04g01194 Cmo-Chr4:6106583 Cmo06g00230 Cmo-Chr6:1232789 2.87E-63 wgd
Cmo04g00163 Cmo-Chr4:841489 Cmo06g00230 Cmo-Chr6:1232789 1.65E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00230 K09872 - cpap:110807714 202.601