Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00261 | ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACTAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCTCGGCGGCTTTCATCGGCTTCGGATCGTTCCGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACGACTGCAGTTGCTGCATCGATCCCGTCATCAGATACCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA | 699 | 46.92 | MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAVAASIPSSDTPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1331216 | 1333624 | + | CmoCh06G002610.1 | Cmo06g00261 | 383823 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00261 | 232 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cmo06g00261 | 232 | CDD | RING_CH-C4HC3_MARCH | 108 | 160 | - | - | |
| Cmo06g00261 | 232 | SUPERFAMILY | RING/U-box | 105 | 163 | - | - | |
| Cmo06g00261 | 232 | SMART | ringv_2 | 107 | 160 | IPR011016 | GO:0008270 | |
| Cmo06g00261 | 232 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 232 | - | - | |
| Cmo06g00261 | 232 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 100 | 166 | IPR011016 | GO:0008270 | |
| Cmo06g00261 | 232 | Pfam | RING-variant domain | 108 | 159 | IPR011016 | GO:0008270 | |
| Cmo06g00261 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 168 | IPR013083 | - | |
| Cmo06g00261 | 232 | PANTHER | OS01G0850200 PROTEIN | 8 | 232 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo06g00261 | Cmo07g01079 | CCT | |
| Cmo06g00261 | Cmo07g01079 | ECH | |
| Cmo06g00261 | Cmo14g00095 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g01330 | Cmo-Chr3:9915582 | Cmo06g00261 | Cmo-Chr6:1331216 | 8.04E-32 | dispersed | |
| Cmo06g00261 | Cmo-Chr6:1331216 | Cmo07g00172 | Cmo-Chr7:909618 | 1.72E-25 | dispersed | |
| Cmo13g00088 | Cmo-Chr13:532189 | Cmo06g00261 | Cmo-Chr6:1331216 | 1.21E-53 | wgd | |
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo06g00261 | Cmo-Chr6:1331216 | 1.19E-138 | wgd | |
| Cmo15g00126 | Cmo-Chr15:602427 | Cmo06g00261 | Cmo-Chr6:1331216 | 5.24E-77 | wgd | |
| Cmo04g03049 | Cmo-Chr4:21346815 | Cmo06g00261 | Cmo-Chr6:1331216 | 5.27E-77 | wgd | |
| Cmo06g00261 | Cmo-Chr6:1331216 | Cmo07g01079 | Cmo-Chr7:5607475 | 1.95E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00261 | - | - | csv:101218915 | 390.963 |