Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00261 ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACTAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCTCGGCGGCTTTCATCGGCTTCGGATCGTTCCGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACGACTGCAGTTGCTGCATCGATCCCGTCATCAGATACCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA 699 46.92 MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAVAASIPSSDTPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 232
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1331216 1333624 + CmoCh06G002610.1 Cmo06g00261 383823
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00261 232 MobiDBLite consensus disorder prediction 1 24 - -
Cmo06g00261 232 CDD RING_CH-C4HC3_MARCH 108 160 - -
Cmo06g00261 232 SUPERFAMILY RING/U-box 105 163 - -
Cmo06g00261 232 SMART ringv_2 107 160 IPR011016 GO:0008270
Cmo06g00261 232 PANTHER ZINC FINGER, RING-CH-TYPE 8 232 - -
Cmo06g00261 232 ProSiteProfiles Zinc finger RING-CH-type profile. 100 166 IPR011016 GO:0008270
Cmo06g00261 232 Pfam RING-variant domain 108 159 IPR011016 GO:0008270
Cmo06g00261 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 168 IPR013083 -
Cmo06g00261 232 PANTHER OS01G0850200 PROTEIN 8 232 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo06g00261 Cmo07g01079 CCT
Cmo06g00261 Cmo07g01079 ECH
Cmo06g00261 Cmo14g00095 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01330 Cmo-Chr3:9915582 Cmo06g00261 Cmo-Chr6:1331216 8.04E-32 dispersed
Cmo06g00261 Cmo-Chr6:1331216 Cmo07g00172 Cmo-Chr7:909618 1.72E-25 dispersed
Cmo13g00088 Cmo-Chr13:532189 Cmo06g00261 Cmo-Chr6:1331216 1.21E-53 wgd
Cmo14g00095 Cmo-Chr14:448197 Cmo06g00261 Cmo-Chr6:1331216 1.19E-138 wgd
Cmo15g00126 Cmo-Chr15:602427 Cmo06g00261 Cmo-Chr6:1331216 5.24E-77 wgd
Cmo04g03049 Cmo-Chr4:21346815 Cmo06g00261 Cmo-Chr6:1331216 5.27E-77 wgd
Cmo06g00261 Cmo-Chr6:1331216 Cmo07g01079 Cmo-Chr7:5607475 1.95E-62 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00261 - - csv:101218915 390.963