Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00271 ATGGCTGACGGCATTGAATCCTTCGACCATGTCCCTCAACAGAGCCGCCGTGATAAGCTCCGAGAACAACCCGACCGCTCCTCTTTCCTCCCTTTTTACGACCCCTCATTAATTTCCTCCTCCGACATCCTCTCCGCCGCCGCCGCCGCCAACAATCCTCTTTTCCAATTCCACCACCCCTTCTTCGACACACAAATTCCCTCTTCCCTCTTACCCGATTCCAACAACTCTGTTCTCTTAAACCATTGCTACGCCGCCTTCAAGCCCGAACCCCTCTCTTTATCTCTCTCCTCTCACCCCTATCTGAGTACTGTTAATGTTCCTCTTGGACCTTTCACTGGGTACGCTTCCATTTTAAAAGGGTCGAGGTTTTTGAAGCCTGCTCAGCAGTTGTTGGAGGAGCTCTGTGATGTTGTTGGCCTTCAACGGACTCAATCCTCTTCGGCCACTTCCGGCAGTTTGAGTGACTGTGGAGTTGTTCATCATTCCCTTGCTTCTAACAAATCTACCCTTGTTTCCATGCTCGACGAGGTTTACCGAAAGTATAAGCAATACTATCTACAAATCGAGGAAGTGATGACATCGTTCGAGTACATCTCCGGGCTCGGGAATGCAGCGCCCTATGCCAACCAAGCTATAAAAGCCATGTACAAGCATTTCCAAAGCTTGAAAAATGTAATTCTTGACCAACTTAAATTCAATAAAAGGATTCATGGTGGTGACTACAGTCAAAGATCGGTTCGAAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGGCCGCAACGAGGACTACCCGAACAAGCAGTGACGGTTCTTCGTGGTTGGTTGTTCGATCATTTTTTGCATCCTTATCCTTCTGATACCGACAAGCTTATGTTGGCTAAACAGACTGGTCTGTCTCGTAGTCAGGTCTCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCATTGGTTGAAGAAATATACAATCTTGAAACAAAGCAAACACAGAAGAATTGCCATAGAGAAGAAGATCGAAACGAGCATCCTCCATCGCGAAACGAACCTCATGACGTACCAATGGGGATTCAAGATGAGCCCTTTAACATATGTTACAACTTGTCAAGCCATCCCCATATGGCGAGCAACAACCACAACGGCGGAGTTTCCTTAACTCTTGGCCTTCACCAGAACAATGGCATTGGCGGCTTCCCTGTTGGGTACGTAATGGGTGGACATTTTGGTAGAGATGTTGTCGGAACTCAGCTGTTACATGACTTTGTAGGCTGA 1278 47.5 MADGIESFDHVPQQSRRDKLREQPDRSSFLPFYDPSLISSSDILSAAAAANNPLFQFHHPFFDTQIPSSLLPDSNNSVLLNHCYAAFKPEPLSLSLSSHPYLSTVNVPLGPFTGYASILKGSRFLKPAQQLLEELCDVVGLQRTQSSSATSGSLSDCGVVHHSLASNKSTLVSMLDEVYRKYKQYYLQIEEVMTSFEYISGLGNAAPYANQAIKAMYKHFQSLKNVILDQLKFNKRIHGGDYSQRSVRNPGFLDHQPVWRPQRGLPEQAVTVLRGWLFDHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPLVEEIYNLETKQTQKNCHREEDRNEHPPSRNEPHDVPMGIQDEPFNICYNLSSHPHMASNNHNGGVSLTLGLHQNNGIGGFPVGYVMGGHFGRDVVGTQLLHDFVG 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1371446 1374513 + CmoCh06G002710.1 Cmo06g00271 383833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00271 425 MobiDBLite consensus disorder prediction 10 25 - -
Cmo06g00271 425 Gene3D - 262 341 - -
Cmo06g00271 425 Pfam Associated with HOX 118 227 IPR006563 -
Cmo06g00271 425 SMART HOX_1 259 323 IPR001356 GO:0003677
Cmo06g00271 425 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
Cmo06g00271 425 SUPERFAMILY Homeodomain-like 261 326 IPR009057 -
Cmo06g00271 425 MobiDBLite consensus disorder prediction 332 351 - -
Cmo06g00271 425 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Cmo06g00271 425 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 397 - -
Cmo06g00271 425 MobiDBLite consensus disorder prediction 331 356 - -
Cmo06g00271 425 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 90 397 - -
Cmo06g00271 425 SMART prehox3 113 229 IPR006563 -
Cmo06g00271 425 MobiDBLite consensus disorder prediction 1 27 - -
Cmo06g00271 425 CDD homeodomain 259 319 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00411 Cmo06g00271 CCT
Cmo06g00271 Cmo07g01064 CCT
Cmo03g00411 Cmo06g00271 ECH
Cmo06g00271 Cmo07g01064 ECH
Cmo06g00271 Cmo14g00104 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00271 Cmo-Chr6:1371446 Cmo13g00245 Cmo-Chr13:2012539 2.11E-80 dispersed
Cmo14g00104 Cmo-Chr14:480107 Cmo06g00271 Cmo-Chr6:1371446 4.20E-46 wgd
Cmo03g00411 Cmo-Chr3:4872357 Cmo06g00271 Cmo-Chr6:1371446 2.11E-95 wgd
Cmo06g00271 Cmo-Chr6:1371446 Cmo07g01064 Cmo-Chr7:5426177 2.24E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9909 PF07526 POX 2.60E-27 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00271 - - cmax:111470021 781.171