Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00292 ATGGATCCACGCCTTCGACGACATGGTGGTTCCCTGAACGGAATTCTTTTAGATAATGGTTCTTTTTTGGTTCAATCGCAAGAGGATGGTATTGGGTCTATATTTCAGAATACCATTATGAGTCATAGCTTCCAAGAATTTAATTGCCTTCCTCCTGATCCATCACCGAGTAATATAGCCTCAAGTTCCAGCGTTATCACCTCATCTTCGAATGATGCGAGTCACGAGGAGGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTTATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAACCATTCTACGAGGTTCTCGGGAAAAAGTATCCTCCTTCCCCGGAGCCAAATAGATCTCTGGGCAATCAATATAGTGATAGCTTCAATGAAGAACTTTGTGGAGATAGTAGTAATTACCTGATTGGTTACAATAATACTTCTTATTATGGTGATGATAACGCTTTTGAAACTCAGAGTGGAGATGTGTTTCGAATCAGAAGCACTTTAGGTGATACTATTTCTCCATCATCTAATAGCTCCTCAAATAGGATAATTAATGAGGATGATGGGTGGGTGGACTTCTCGAATAATGCAATTCGAGTCCCTGAGCCTAACAACAGAACCCAATCTATTTGGCAGTTCCAAAAAGGGCTTGAGGAGGCTAGCAAATTTTTACCCGGTGGAAACAACTTGTGTCTTGATTTTGAGGGAAACGAGTCAGCAACTCAGGGTTTGGATGAGGGAACGAGCCAGATGTATGTGAAGGCTGCAAGAAATGATCAGAGGAAGACTTCGTCGCTTGAGTCACGAGTAAGAAAGAATCTGCATGATGAGGATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTATATCTACAGAGTCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCACGATCGGTTAGTTTCATTTCGACAGGAATTACAGAATGCTAAAATCAAAAGCATGCTGCAGACTGGGCAACTAAAAGAGTCTAATGGTGGGAGAGGTCGTCGGAAGAAGCAAAGTGGGAAAAAGGAGGTTGTGGATTTGAGAACTCTTCTGATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCTAGTGAGCTTCTAAAGCAGGTCAGGCAACATGCTTCTCCCTTTGGAGATGGAAATCAGAGACTGGCCAGTTATTTCGCCGATGGTCTGGAGGCACGCTTGGCAGGTACTGGTAGCCAAATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTTTTGAAAGCCTATCACCTGTATCTTGCGGCATGCCCATTTAGGAAGATCTCTAATTTTACTTCAAACAGGACTACAATGATTGCTTCTGAGACTGCAACTAAGCTTCACGTCATAGATTTTGGTATTCTTTATGGTTTTCAGTGGCCTACTTTAATCCAGAGACTGTCATGGAGAAAAGGAGGACCTCCAAAGCTTCGGATTACTGGAATAGAATTTCCCCAGCCTGGCTTCCGTCCAGCAGAGAGAGTTGAGGAGACAGGCCGTCGATTGGCAGCTTATGCAGAGACTTTTAACGTGCCATTTGAGTATAATGCCATAGCAAAAAAATGGGAAACTATTACAGTTGAAGATCTCAATATCGATCAGGGTGAGTTCATAGTTGTTAATTGTTTGTATCGAGCTAAAAATTTGCTTGAGGAGAGTGTTACTACAGAGAGTCCTAGAAATACTGTTCTTAGATTGATACACAAAATTAATCCTAACTTATTCATCACTGGCGTTGTCAATGGGGCATACAATGCTCCTTTCTTCGTTACCAGATTTCGAGAGGCCTTGTTTCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTATTGGAGAGAGAGATCTTTGGTAGGGAGGCTTTAAACGTTACAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAATGGCAATTCCGGATCATGAGGGCTGGATTTGAGCAACTTCCTTTTCATCCTGAGATTTTTGAGAGGGCTGTTGAAAAGGTGCGGTCAAGTTACCACAGAGATTTTTTGATTGATGAAGATAGTAGATGGATACTTCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCATGGAAACCTACTCAAGAGTGA 2274 42.22 MDPRLRRHGGSLNGILLDNGSFLVQSQEDGIGSIFQNTIMSHSFQEFNCLPPDPSPSNIASSSSVITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKPFYEVLGKKYPPSPEPNRSLGNQYSDSFNEELCGDSSNYLIGYNNTSYYGDDNAFETQSGDVFRIRSTLGDTISPSSNSSSNRIINEDDGWVDFSNNAIRVPEPNNRTQSIWQFQKGLEEASKFLPGGNNLCLDFEGNESATQGLDEGTSQMYVKAARNDQRKTSSLESRVRKNLHDEDGDLEEERSSKQAAISTESTLRSKMFDIVLLCSAGEGHDRLVSFRQELQNAKIKSMLQTGQLKESNGGRGRRKKQSGKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGNQRLASYFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTTMIASETATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAETFNVPFEYNAIAKKWETITVEDLNIDQGEFIVVNCLYRAKNLLEESVTTESPRNTVLRLIHKINPNLFITGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVTACEGWERVERPETYKQWQFRIMRAGFEQLPFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISAWKPTQE 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1456180 1458453 - CmoCh06G002920.1 Cmo06g00292 383854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00292 757 ProSiteProfiles GRAS family profile. 373 753 IPR005202 -
Cmo06g00292 757 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 754 IPR005202 -
Cmo06g00292 757 MobiDBLite consensus disorder prediction 355 376 - -
Cmo06g00292 757 MobiDBLite consensus disorder prediction 277 314 - -
Cmo06g00292 757 Pfam GRAS domain family 382 753 IPR005202 -
Cmo06g00292 757 PANTHER SCARECROW-LIKE PROTEIN 9 39 754 - -
Cmo06g00292 757 MobiDBLite consensus disorder prediction 281 310 - -
Cmo06g00292 757 MobiDBLite consensus disorder prediction 51 73 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00292 Cmo14g00135 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00292 Cmo-Chr6:1456180 Cmo20g00673 Cmo-Chr20:3276967 8.59E-72 dispersed
Cmo01g00641 Cmo-Chr1:3281533 Cmo06g00292 Cmo-Chr6:1456180 0 wgd
Cmo13g00114 Cmo-Chr13:643198 Cmo06g00292 Cmo-Chr6:1456180 0 wgd
Cmo14g00135 Cmo-Chr14:586514 Cmo06g00292 Cmo-Chr6:1456180 0 wgd
Cmo02g00793 Cmo-Chr2:4900767 Cmo06g00292 Cmo-Chr6:1456180 4.91E-10 wgd
Cmo20g00427 Cmo-Chr20:2014095 Cmo06g00292 Cmo-Chr6:1456180 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9910 PF03514 GRAS 1.00E-115 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00292 - - csv:101205887 1254.58