Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00304 ATGAATTTTTCATCCATTCCTGCTTATCTTCATCCTTCTAATTGGCAACAGCAAGTTTCCCATCAACTTGGAACTACTACTACTACTACTACTACTACCTCTGCACCCACTTCTCAGCTTCCTCCTCCTCCTCCTCCTCCACCACCTCATGGCGGTTCCATCCGGCCCGGTTCCATGGCGGAGCGAGCTCGATTGGCTAATATTCCCATGCCTGATGCTACATTGAAGTGCCCAAGATGTGAATCAACCAACACTAAGTTTTGTTACTTCAACAATTATAGCCTAACTCAGCCTCGCCACTTTTGCAAGACTTGCCGACGCTACTGGACGAGAGGTGGCGCTCTGAGGAACGTCCCGGTCGGGGGCGGTTGTCGGAGGAATAAAAGAAGTAAAGGGAGAAATTCTAAATCGCCGCCGGTTAGTTCTGACCGGCAACAACAAACTAGCGGTTCAGCTAATTCCTCATCAAGTGCAATAGCTTCCAATAATAATAGTGGACTTTCCCCACAGATCCCACCACTCCGCTTCATGGCTCCTCTCCACCACCACCAACAACTCACTGACTTCGACATCGGCGGCTTCAACTACGGCGGCGGCGGCGGCGTACTCTCAGCTCCTGCCACCGCCGCCGCCGCCGCCGGCGACCTGAGTTTCCAATTGGGTAACACTAATTTAGCTGGAGGAACAAGTATAGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAACAACAAGCTCCCCAATTTCCCTTCTTGTCGAGCCTCGACCCTTTCGACGGCGGTAGTAGCGGCGGCGGCGATGGGTCGGGGTGGCAAATGAGGCCAAAATTACCCTCAGGATCAAGGAATTTAACCCAAATGGGAAATTCAGTGAAAATGGAAGGAACCCCAAATCATGAAGCTAACATTGGAAGGCAATTTGTTGGGAATGAACAATATTGGAGCGGTGGATCAATGGCTTGGTCGGATCTTTCTGGCTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1017 50.44 MNFSSIPAYLHPSNWQQQVSHQLGTTTTTTTTTSAPTSQLPPPPPPPPPHGGSIRPGSMAERARLANIPMPDATLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSKSPPVSSDRQQQTSGSANSSSSAIASNNNSGLSPQIPPLRFMAPLHHHQQLTDFDIGGFNYGGGGGVLSAPATAAAAAGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFPFLSSLDPFDGGSSGGGDGSGWQMRPKLPSGSRNLTQMGNSVKMEGTPNHEANIGRQFVGNEQYWSGGSMAWSDLSGFSSSSSTRNPL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1499655 1500817 + CmoCh06G003040.1 Cmo06g00304 383866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00304 338 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Cmo06g00304 338 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Cmo06g00304 338 MobiDBLite consensus disorder prediction 17 57 - -
Cmo06g00304 338 MobiDBLite consensus disorder prediction 116 174 - -
Cmo06g00304 338 MobiDBLite consensus disorder prediction 17 36 - -
Cmo06g00304 338 Pfam Dof domain, zinc finger 73 129 IPR003851 GO:0003677|GO:0006355
Cmo06g00304 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 334 IPR045174 GO:0003700|GO:0006355
Cmo06g00304 338 MobiDBLite consensus disorder prediction 37 53 - -
Cmo06g00304 338 MobiDBLite consensus disorder prediction 134 170 - -
Cmo06g00304 338 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 334 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00443 Cmo06g00304 CCT
Cmo03g00443 Cmo06g00304 ECH
Cmo06g00304 Cmo14g00147 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00618 Cmo-Chr1:3189631 Cmo06g00304 Cmo-Chr6:1499655 2.46E-54 wgd
Cmo13g00132 Cmo-Chr13:757753 Cmo06g00304 Cmo-Chr6:1499655 1.85E-51 wgd
Cmo14g00147 Cmo-Chr14:642536 Cmo06g00304 Cmo-Chr6:1499655 2.00E-143 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo06g00304 Cmo-Chr6:1499655 5.38E-49 wgd
Cmo02g00815 Cmo-Chr2:4986104 Cmo06g00304 Cmo-Chr6:1499655 1.05E-41 wgd
Cmo20g00451 Cmo-Chr20:2102972 Cmo06g00304 Cmo-Chr6:1499655 4.20E-45 wgd
Cmo03g00443 Cmo-Chr3:5025083 Cmo06g00304 Cmo-Chr6:1499655 7.80E-45 wgd
Cmo04g01262 Cmo-Chr4:6404620 Cmo06g00304 Cmo-Chr6:1499655 4.09E-47 wgd
Cmo04g00221 Cmo-Chr4:1111117 Cmo06g00304 Cmo-Chr6:1499655 9.83E-47 wgd
Cmo06g00304 Cmo-Chr6:1499655 Cmo07g01030 Cmo-Chr7:5100192 2.21E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9912 PF02701 zf-Dof 3.60E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00304 - - cpep:111791192 454.907