Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00314 ATGGGAGAAGAAGCAGCTGGTTTAGCTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTCGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCTAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACCAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACTTCAAGCGATGGAGTTCGTTGCCAGAACAACATGTCTCGGAATGATGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGGTCAGCTGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGCAAGTTTCCATAAGGACAGTACAGGTATTGAAGTGGAAAATGATAATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCAAACCCTAATTTATCCAATCCAGTCATGCAACAGAAGAAATCGGCAGAGAAAGGCACCAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCTGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGATGTCCTCGAGCTTTCCACACAGGGTGCCTGCATCTACAGAATGTTCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCAGCTTCTGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTTCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAAATGAGTGAAGAACAATTGGCGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGCAGCGGTCAACATGA 2526 42.79 MGEEAAGLAAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVRCQNNMSRNDVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQASFHKDSTGIEVENDNVKLPKLSHPIERPNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDSLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVQRST 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1533434 1541070 + CmoCh06G003140.1 Cmo06g00314 383876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00314 841 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 838 - -
Cmo06g00314 841 Pfam PHD-finger 491 533 IPR019787 -
Cmo06g00314 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Cmo06g00314 841 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Cmo06g00314 841 SUPERFAMILY FYVE/PHD zinc finger 569 627 IPR011011 -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 156 185 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 370 384 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 20 56 - -
Cmo06g00314 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 550 IPR013083 -
Cmo06g00314 841 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 813 IPR016181 -
Cmo06g00314 841 SMART PHD_3 570 627 IPR001965 -
Cmo06g00314 841 SMART PHD_3 491 532 IPR001965 -
Cmo06g00314 841 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Cmo06g00314 841 PANTHER AUTOIMMUNE REGULATOR 33 838 - -
Cmo06g00314 841 SUPERFAMILY FYVE/PHD zinc finger 479 534 IPR011011 -
Cmo06g00314 841 Gene3D - 673 837 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 1 123 - -
Cmo06g00314 841 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 156 191 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 363 393 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 57 120 - -
Cmo06g00314 841 Pfam Tify domain binding domain 258 312 IPR032308 -
Cmo06g00314 841 Pfam Tify domain binding domain 425 474 IPR032308 -
Cmo06g00314 841 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00314 Cmo14g00154 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00314 Cmo-Chr6:1533434 Cmo20g00564 Cmo-Chr20:2712965 5.95E-07 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo06g00314 Cmo-Chr6:1533434 0 wgd
Cmo04g01272 Cmo-Chr4:6453158 Cmo06g00314 Cmo-Chr6:1533434 3.93E-41 wgd
Cmo04g00229 Cmo-Chr4:1146103 Cmo06g00314 Cmo-Chr6:1533434 1.72E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9913 PF16135 TDBD 2.90E-12 No_clan Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00314 - - cmax:111481523 1544.64