Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00314 ATGGGAGAAGAAGCAGCTGGTTTAGCTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTCGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCTAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACCAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACTTCAAGCGATGGAGTTCGTTGCCAGAACAACATGTCTCGGAATGATGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGGTCAGCTGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGCAAGTTTCCATAAGGACAGTACAGGTATTGAAGTGGAAAATGATAATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCAAACCCTAATTTATCCAATCCAGTCATGCAACAGAAGAAATCGGCAGAGAAAGGCACCAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCTGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGATGTCCTCGAGCTTTCCACACAGGGTGCCTGCATCTACAGAATGTTCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCAGCTTCTGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTTCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAAATGAGTGAAGAACAATTGGCGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGCAGCGGTCAACATGA 2526 42.79 MGEEAAGLAAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVRCQNNMSRNDVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQASFHKDSTGIEVENDNVKLPKLSHPIERPNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDSLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVQRST 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1533434 1541070 + CmoCh06G003140.1 Cmo06g00314 383876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00314 841 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 838 - -
Cmo06g00314 841 Pfam PHD-finger 491 533 IPR019787 -
Cmo06g00314 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Cmo06g00314 841 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Cmo06g00314 841 SUPERFAMILY FYVE/PHD zinc finger 569 627 IPR011011 -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 156 185 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 370 384 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 20 56 - -
Cmo06g00314 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 550 IPR013083 -
Cmo06g00314 841 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 813 IPR016181 -
Cmo06g00314 841 SMART PHD_3 570 627 IPR001965 -
Cmo06g00314 841 SMART PHD_3 491 532 IPR001965 -
Cmo06g00314 841 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Cmo06g00314 841 PANTHER AUTOIMMUNE REGULATOR 33 838 - -
Cmo06g00314 841 SUPERFAMILY FYVE/PHD zinc finger 479 534 IPR011011 -
Cmo06g00314 841 Gene3D - 673 837 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 1 123 - -
Cmo06g00314 841 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 156 191 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 363 393 - -
Cmo06g00314 841 MobiDBLite consensus disorder prediction 57 120 - -
Cmo06g00314 841 Pfam Tify domain binding domain 258 312 IPR032308 -
Cmo06g00314 841 Pfam Tify domain binding domain 425 474 IPR032308 -
Cmo06g00314 841 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00314 - - - cmax:111481523 1544.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00314 Cmo14g00154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00314 Cmo-Chr6:1533434 Cmo20g00564 Cmo-Chr20:2712965 5.95E-07 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo06g00314 Cmo-Chr6:1533434 0 wgd
Cmo04g01272 Cmo-Chr4:6453158 Cmo06g00314 Cmo-Chr6:1533434 3.93E-41 wgd
Cmo04g00229 Cmo-Chr4:1146103 Cmo06g00314 Cmo-Chr6:1533434 1.72E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00154 CST 25 837 PHD Transcription Factor Family AT3G53680 53.9 5.9e-250 861.3
Cmo06g00314 CST 18 837 PHD Transcription Factor Family AT3G53680 53.5 1.0e-249 860.5
Cmo20g00463 CST 312 450 PHD Transcription Factor Family AT3G53680 51.8 6.1e-37 153.7
Cmo04g00229 CST,ECH 438 564 PHD Transcription Factor Family AT3G53680 55.1 6.1e-37 153.7
Cmo04g01272 CST,ECH 437 563 PHD Transcription Factor Family AT3G53680 54.3 2.3e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9913 PF16135 TDBD 2.90E-12 No_clan Cmo TR