Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00331 ATGGAAGAATTAAAACCCTCCACTGTAATCATGGCCGCCCTCTCCACCCTCTCTTCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCCCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCAATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGGTGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGACATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGCTCCTCATCTGATGGAGATTAA 843 58.36 MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1617530 1618372 + CmoCh06G003310.1 Cmo06g00331 383893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00331 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 257 IPR013083 -
Cmo06g00331 280 SUPERFAMILY RING/U-box 209 257 - -
Cmo06g00331 280 Pfam Ring finger domain 209 251 IPR001841 -
Cmo06g00331 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 275 - -
Cmo06g00331 280 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Cmo06g00331 280 SMART ring_2 210 250 IPR001841 -
Cmo06g00331 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 3 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00331 Cmo-Chr6:1617530 Cmo03g00284 Cmo-Chr3:4080281 1.04E-14 dispersed
Cmo06g00331 Cmo-Chr6:1617530 Cmo15g00223 Cmo-Chr15:1082494 3.05E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00331 - - csv:101209757 422.935