Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00331 | ATGGAAGAATTAAAACCCTCCACTGTAATCATGGCCGCCCTCTCCACCCTCTCTTCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCCCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCAATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGGTGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGACATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGCTCCTCATCTGATGGAGATTAA | 843 | 58.36 | MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1617530 | 1618372 | + | CmoCh06G003310.1 | Cmo06g00331 | 383893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00331 | 280 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 180 | 257 | IPR013083 | - | |
Cmo06g00331 | 280 | SUPERFAMILY | RING/U-box | 209 | 257 | - | - | |
Cmo06g00331 | 280 | Pfam | Ring finger domain | 209 | 251 | IPR001841 | - | |
Cmo06g00331 | 280 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 3 | 275 | - | - | |
Cmo06g00331 | 280 | ProSiteProfiles | Zinc finger RING-type profile. | 210 | 251 | IPR001841 | - | |
Cmo06g00331 | 280 | SMART | ring_2 | 210 | 250 | IPR001841 | - | |
Cmo06g00331 | 280 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC | 3 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00331 | Cmo-Chr6:1617530 | Cmo03g00284 | Cmo-Chr3:4080281 | 1.04E-14 | dispersed | |
Cmo06g00331 | Cmo-Chr6:1617530 | Cmo15g00223 | Cmo-Chr15:1082494 | 3.05E-15 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00331 | - | - | csv:101209757 | 422.935 |