Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00334 ATGGTTAAACCCTGCTGGAAATCCCATGATGATGATGATTCAAACGGACGAGTCGATGGATTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTCATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGTCCAATCCAGGTCCACAGGGGACCTTCGTCGGAGTTTATGACGGTCATGGTGGAACTGAAGCTTCGCGGTTCGTCAATGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTGCACCAGAACATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGATTTCTCTCTCTCGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGGATCATATGCAACGGACAGCTGTATATTGCCAATGCAGGTGATTCGCGAGTAGTGCTCGGGAGAACTGAGCGAGCCACTAAAGAAATCATTGCCATTCAATTGTCCACAGAGCACAATGCGGGCATAGAATCAGTGAGAGATGAACTTCGGATGGTCCATCCAGAAGATCCTCAGATTGTGATCCTAAAACACAATGTTTGGCGTGTTAAAGGTATCATACAGGTTTCAAGATCCATTGGCGATGCATATTTGAAAAAGGCAAAGTTCAACAGACCTCCTCTGCCGCCTAAATTTCAACTGCCTGAGCCATTTTACGTACCAATCCTCAGTGCAGAACCATCAATTCTGGTGCACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGCCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATTCTCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTTCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCCTCCCCTTGTTCCTTGTCAATCAGAGGAGGTCTCCCTTCGTCTGAAAATTCCTAG 1107 44.9 MVKPCWKSHDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMSNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQNISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATKEIIAIQLSTEHNAGIESVRDELRMVHPEDPQIVILKHNVWRVKGIIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYVPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYSRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIRGGLPSSENS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1625882 1628471 + CmoCh06G003340.1 Cmo06g00334 383896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00334 368 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Cmo06g00334 368 CDD PP2Cc 32 342 IPR001932 -
Cmo06g00334 368 Gene3D - 22 349 IPR036457 -
Cmo06g00334 368 PANTHER ALPHABET, ISOFORM E-RELATED 3 361 - -
Cmo06g00334 368 SMART PP2C_4 12 340 IPR001932 -
Cmo06g00334 368 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Cmo06g00334 368 Pfam Protein phosphatase 2C 61 311 IPR001932 -
Cmo06g00334 368 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 3 361 - -
Cmo06g00334 368 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00334 Cmo-Chr6:1625882 Cmo02g00266 Cmo-Chr2:1281411 0 dispersed
Cmo14g00170 Cmo-Chr14:759883 Cmo06g00334 Cmo-Chr6:1625882 0 wgd
Cmo04g01302 Cmo-Chr4:6609446 Cmo06g00334 Cmo-Chr6:1625882 0 wgd
Cmo04g00262 Cmo-Chr4:1306617 Cmo06g00334 Cmo-Chr6:1625882 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00334 K01102 - csv:101210750 693.345