Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00339 | ATGATTTGGATTCCTTGTTCTGGAGATTCAAATAGGAAGGTTAAGTCCAAGAAATTGAAGAACAAACCTGCTTTGGAGAATCTACAAACAAGTTCCTCCTTCAGTGAAGCCTCAAATGGTGGAGGATCTGATCATATAAAGGCACAAATATTTCCATTCCGGGAGTTGGCCGCAGCTACCAGGAATTTTCGGGCAGACTGCCTCTTGGGTGAGGGAGGTTTTGGTAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTAGTGGCAATCAAACAACTCGATCGCAATGGGCTGCAAGGGAACAGGGAGTTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGGTATATGAATATATGCCTCTAGGATCCTTAGATGACCATTTACATGACGTTTCGCCTGGTACAAAAGTACTAGATTGGAATACTAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCATGATAAAGCTAGCCCACCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGCTGTCTGATTTTGGTTTGGCCAAACTTGGGCCTGTTGGGGACAATACTCATGTGTCTACCAGAGTTATGGGTACTTATGGATATTGTGCTCCCGAATATGCAATGACTGGCCAGTTAACTCTCAAGTCAGATGTTTATAGCTTCGGCGTTGTTCTTCTAGAACTCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTGTTCAATGATCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTTAGAGGCCAACATCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTCCAAGAGCAGCCAAATATGCGTCCCGTGATCGCCGATGTCGTCACAGCTCTCTCGTATCTCGCTTCCCAAAGATACAGCCCTAGTACGAGCATACCCCACGGCTCCCCTGCATCTGCCTTTACACCTCCAAGAAACAACAGAGATTCTGACAGGAAGCCTAATGGCGGTCGAAGATACGATAGAAATCACACTCGAAAGCTATAA | 1164 | 43.9 | MIWIPCSGDSNRKVKSKKLKNKPALENLQTSSSFSEASNGGGSDHIKAQIFPFRELAAATRNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLDDHLHDVSPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLELITGRKAIDDSRAAGEQNLVSWARPLFNDRLRFAQMADPMLRGQHPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYSPSTSIPHGSPASAFTPPRNNRDSDRKPNGGRRYDRNHTRKL | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1641123 | 1644452 | + | CmoCh06G003390.1 | Cmo06g00339 | 383901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00339 | 387 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED | 1 | 375 | - | - | |
Cmo06g00339 | 387 | Pfam | Protein tyrosine and serine/threonine kinase | 68 | 336 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo06g00339 | 387 | Gene3D | Phosphorylase Kinase; domain 1 | 35 | 139 | - | - | |
Cmo06g00339 | 387 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 350 | - | - | |
Cmo06g00339 | 387 | CDD | STKc_IRAK | 69 | 337 | - | - | |
Cmo06g00339 | 387 | PANTHER | OS07G0668900 PROTEIN | 1 | 375 | - | - | |
Cmo06g00339 | 387 | MobiDBLite | consensus disorder prediction | 347 | 364 | - | - | |
Cmo06g00339 | 387 | ProSitePatterns | Protein kinases ATP-binding region signature. | 69 | 92 | IPR017441 | GO:0005524 | |
Cmo06g00339 | 387 | ProSiteProfiles | Protein kinase domain profile. | 63 | 340 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00339 | 387 | SUPERFAMILY | Protein kinase-like (PK-like) | 49 | 352 | IPR011009 | - | |
Cmo06g00339 | 387 | SMART | serkin_6 | 63 | 340 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00339 | 387 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 186 | 198 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g00339 | 387 | MobiDBLite | consensus disorder prediction | 347 | 387 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00339 | Cmo-Chr6:1641123 | Cmo14g00169 | Cmo-Chr14:757185 | 0 | dispersed | |
Cmo20g00489 | Cmo-Chr20:2288463 | Cmo06g00339 | Cmo-Chr6:1641123 | 2.97E-169 | wgd | |
Cmo04g01306 | Cmo-Chr4:6640283 | Cmo06g00339 | Cmo-Chr6:1641123 | 0 | wgd | |
Cmo04g00265 | Cmo-Chr4:1331189 | Cmo06g00339 | Cmo-Chr6:1641123 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74400 | PF07714 | PK_Tyr_Ser-Thr | 6.00E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00339 | - | - | csv:101211491 | 692.96 |