Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00339 ATGATTTGGATTCCTTGTTCTGGAGATTCAAATAGGAAGGTTAAGTCCAAGAAATTGAAGAACAAACCTGCTTTGGAGAATCTACAAACAAGTTCCTCCTTCAGTGAAGCCTCAAATGGTGGAGGATCTGATCATATAAAGGCACAAATATTTCCATTCCGGGAGTTGGCCGCAGCTACCAGGAATTTTCGGGCAGACTGCCTCTTGGGTGAGGGAGGTTTTGGTAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTAGTGGCAATCAAACAACTCGATCGCAATGGGCTGCAAGGGAACAGGGAGTTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGGTATATGAATATATGCCTCTAGGATCCTTAGATGACCATTTACATGACGTTTCGCCTGGTACAAAAGTACTAGATTGGAATACTAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCATGATAAAGCTAGCCCACCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGCTGTCTGATTTTGGTTTGGCCAAACTTGGGCCTGTTGGGGACAATACTCATGTGTCTACCAGAGTTATGGGTACTTATGGATATTGTGCTCCCGAATATGCAATGACTGGCCAGTTAACTCTCAAGTCAGATGTTTATAGCTTCGGCGTTGTTCTTCTAGAACTCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTGTTCAATGATCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTTAGAGGCCAACATCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTCCAAGAGCAGCCAAATATGCGTCCCGTGATCGCCGATGTCGTCACAGCTCTCTCGTATCTCGCTTCCCAAAGATACAGCCCTAGTACGAGCATACCCCACGGCTCCCCTGCATCTGCCTTTACACCTCCAAGAAACAACAGAGATTCTGACAGGAAGCCTAATGGCGGTCGAAGATACGATAGAAATCACACTCGAAAGCTATAA 1164 43.9 MIWIPCSGDSNRKVKSKKLKNKPALENLQTSSSFSEASNGGGSDHIKAQIFPFRELAAATRNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLDDHLHDVSPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLELITGRKAIDDSRAAGEQNLVSWARPLFNDRLRFAQMADPMLRGQHPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYSPSTSIPHGSPASAFTPPRNNRDSDRKPNGGRRYDRNHTRKL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1641123 1644452 + CmoCh06G003390.1 Cmo06g00339 383901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00339 387 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 375 - -
Cmo06g00339 387 Pfam Protein tyrosine and serine/threonine kinase 68 336 IPR001245 GO:0004672|GO:0006468
Cmo06g00339 387 Gene3D Phosphorylase Kinase; domain 1 35 139 - -
Cmo06g00339 387 Gene3D Transferase(Phosphotransferase) domain 1 140 350 - -
Cmo06g00339 387 CDD STKc_IRAK 69 337 - -
Cmo06g00339 387 PANTHER OS07G0668900 PROTEIN 1 375 - -
Cmo06g00339 387 MobiDBLite consensus disorder prediction 347 364 - -
Cmo06g00339 387 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Cmo06g00339 387 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00339 387 SUPERFAMILY Protein kinase-like (PK-like) 49 352 IPR011009 -
Cmo06g00339 387 SMART serkin_6 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00339 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Cmo06g00339 387 MobiDBLite consensus disorder prediction 347 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00339 Cmo-Chr6:1641123 Cmo14g00169 Cmo-Chr14:757185 0 dispersed
Cmo20g00489 Cmo-Chr20:2288463 Cmo06g00339 Cmo-Chr6:1641123 2.97E-169 wgd
Cmo04g01306 Cmo-Chr4:6640283 Cmo06g00339 Cmo-Chr6:1641123 0 wgd
Cmo04g00265 Cmo-Chr4:1331189 Cmo06g00339 Cmo-Chr6:1641123 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74400 PF07714 PK_Tyr_Ser-Thr 6.00E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00339 - - csv:101211491 692.96