Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00342 | ATGGAAGAAAGTAGGAGGGCTGAGTATACTGAATGGGATGTTGAGTTCCCCCTATTCTCTTGCCTACCTTGTCCTTGTGGAGGATTATTTCTTTTTGGAAATGGAATTGAACATCTGAAGAGCTTAGAAAGAAGGTGGAGTTTCAAGCCCATGCTGAATCTTAACCACGACGTTGTTCCATCGGAGATGGTTACTGAGAATTTTCTGAATCTTCCAGCGAACAGAATGGAAACCGCTGGATGTTTCAACTCGTCCCCCGTCGTTAATGGCGATCCTTCCGCCAGCACCACCAACGTCGACGAGGTTTTCCCGTTCACTTTCGGTAAAAATTCCGCGGTTCAAGAAAGCTCAACGGTGAAATCACTTTCTATTTCCGATGACCACCGCGACCAGACGATGGAGCTCTTCCCGTTAACGGACGGATTAAATTCTATTTCCGATGACCACCGCGACCAGACGATGGAGTTCTTCCCGTTAACCGAAGGATTAAATTCTAGTTCGAGTACTCAGAAGCAGTGGCCGGGGGTTTCTCCATCGGAATTCAAACATGGAGACGGCGGCGCACCGGCGCAGCCACAGGATCAGGCGATGAGGAAAAACAGACGCGGTCCAAGGCCTCGAAGTTCGCAGTATCGTGGCGTTACGTATTATCGTAGAACCGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGCGGTTTCGATACTGCTCATGCTGCCGCCAGAGCATATGATAAAGCGGCGATCAAGTTTCGGGGGGTCGACGCAGATATCAATTTCAGTGTCAGAACTTATGAAGAAGATATCAAACAGATGAGTAATATCACTAAGGAAGAGCTTATTCATAATCTTCGTCGCCGTAGCAATGGATTTACAAGAGGGAGCTCCAAGTACAGAGGAGTTACCTTGCATAAATGTGGTCGATGGGAAGCTCGGATGGGCCAGTTCTTAGGCAGAAAATGCAATGGTAAAGAGGCTGTAACAAACTTTGATCCAAGTTCTTATATGTCAGAGATGGCTGCAGAGACTGACACAGGAGAGGACAACCAGAGTCTTGACCTGAGTTTGCGAATTGCTCCCCCCAATCATTCTGACCCTCAAAGTGAGAGCATTCGCATGTTTGGTAATGGTTGTCATCTCAGCTCACCCGACGTCGTCGTTGATGGTAGAACGACGCTTGACAACTCTGTTTCGGCAGCAATTGGATCTTCTCAGCCATATGGCTATGCTGTGCCTTCAAATTCCTGTTTCTATACCATCTCCAGGGACAGAGCAGCAGAGACGAGAATGGGGGAGTGGCAAATCCATGGCCACTCAAATGGATTAACCTCTGTGCCATTCTTCTCTGCTGCAGCATCATCAGGATTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCATTTCATCCTCTGCTGTTGGTGAAATCCATTTCTCAGCTATTTTCCATCACCATGACAGCAACTTATCCAACTTCTACTGTAGGAATTGA | 1518 | 47.23 | MEESRRAEYTEWDVEFPLFSCLPCPCGGLFLFGNGIEHLKSLERRWSFKPMLNLNHDVVPSEMVTENFLNLPANRMETAGCFNSSPVVNGDPSASTTNVDEVFPFTFGKNSAVQESSTVKSLSISDDHRDQTMELFPLTDGLNSISDDHRDQTMEFFPLTEGLNSSSSTQKQWPGVSPSEFKHGDGGAPAQPQDQAMRKNRRGPRPRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDKAAIKFRGVDADINFSVRTYEEDIKQMSNITKEELIHNLRRRSNGFTRGSSKYRGVTLHKCGRWEARMGQFLGRKCNGKEAVTNFDPSSYMSEMAAETDTGEDNQSLDLSLRIAPPNHSDPQSESIRMFGNGCHLSSPDVVVDGRTTLDNSVSAAIGSSQPYGYAVPSNSCFYTISRDRAAETRMGEWQIHGHSNGLTSVPFFSAAASSGFLSSSSSSSSSSSSSAISSSAVGEIHFSAIFHHHDSNLSNFYCRN | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1658640 | 1663071 | + | CmoCh06G003420.1 | Cmo06g00342 | 383904 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00342 | 505 | MobiDBLite | consensus disorder prediction | 161 | 213 | - | - | |
Cmo06g00342 | 505 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 325 | 489 | - | - | |
Cmo06g00342 | 505 | Gene3D | AP2/ERF domain | 209 | 268 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo06g00342 | 505 | ProSiteProfiles | AP2/ERF domain profile. | 210 | 266 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00342 | 505 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 74 | 325 | - | - | |
Cmo06g00342 | 505 | Pfam | AP2 domain | 210 | 258 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00342 | 505 | SMART | rav1_2 | 302 | 342 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00342 | 505 | SMART | rav1_2 | 210 | 272 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00342 | 505 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 74 | 325 | - | - | |
Cmo06g00342 | 505 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 325 | 489 | - | - | |
Cmo06g00342 | 505 | SUPERFAMILY | DNA-binding domain | 209 | 267 | IPR016177 | GO:0003677 | |
Cmo06g00342 | 505 | CDD | AP2 | 209 | 265 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00342 | 505 | MobiDBLite | consensus disorder prediction | 161 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00342 | Cmo-Chr6:1658640 | Cmo07g00709 | Cmo-Chr7:3197835 | 1.09E-07 | dispersed | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo06g00342 | Cmo-Chr6:1658640 | 5.93E-146 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo06g00342 | Cmo-Chr6:1658640 | 2.78E-88 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo06g00342 | Cmo-Chr6:1658640 | 4.97E-84 | wgd | |
Cmo04g01310 | Cmo-Chr4:6668332 | Cmo06g00342 | Cmo-Chr6:1658640 | 8.26E-43 | wgd | |
Cmo04g00269 | Cmo-Chr4:1358706 | Cmo06g00342 | Cmo-Chr6:1658640 | 1.25E-43 | wgd | |
Cmo06g00342 | Cmo-Chr6:1658640 | Cmo07g00986 | Cmo-Chr7:4842641 | 4.09E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9914 | PF00847 | AP2 | 4.00E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00342 | K09284 | - | csv:101211242 | 514.612 |