Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00342 ATGGAAGAAAGTAGGAGGGCTGAGTATACTGAATGGGATGTTGAGTTCCCCCTATTCTCTTGCCTACCTTGTCCTTGTGGAGGATTATTTCTTTTTGGAAATGGAATTGAACATCTGAAGAGCTTAGAAAGAAGGTGGAGTTTCAAGCCCATGCTGAATCTTAACCACGACGTTGTTCCATCGGAGATGGTTACTGAGAATTTTCTGAATCTTCCAGCGAACAGAATGGAAACCGCTGGATGTTTCAACTCGTCCCCCGTCGTTAATGGCGATCCTTCCGCCAGCACCACCAACGTCGACGAGGTTTTCCCGTTCACTTTCGGTAAAAATTCCGCGGTTCAAGAAAGCTCAACGGTGAAATCACTTTCTATTTCCGATGACCACCGCGACCAGACGATGGAGCTCTTCCCGTTAACGGACGGATTAAATTCTATTTCCGATGACCACCGCGACCAGACGATGGAGTTCTTCCCGTTAACCGAAGGATTAAATTCTAGTTCGAGTACTCAGAAGCAGTGGCCGGGGGTTTCTCCATCGGAATTCAAACATGGAGACGGCGGCGCACCGGCGCAGCCACAGGATCAGGCGATGAGGAAAAACAGACGCGGTCCAAGGCCTCGAAGTTCGCAGTATCGTGGCGTTACGTATTATCGTAGAACCGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGCGGTTTCGATACTGCTCATGCTGCCGCCAGAGCATATGATAAAGCGGCGATCAAGTTTCGGGGGGTCGACGCAGATATCAATTTCAGTGTCAGAACTTATGAAGAAGATATCAAACAGATGAGTAATATCACTAAGGAAGAGCTTATTCATAATCTTCGTCGCCGTAGCAATGGATTTACAAGAGGGAGCTCCAAGTACAGAGGAGTTACCTTGCATAAATGTGGTCGATGGGAAGCTCGGATGGGCCAGTTCTTAGGCAGAAAATGCAATGGTAAAGAGGCTGTAACAAACTTTGATCCAAGTTCTTATATGTCAGAGATGGCTGCAGAGACTGACACAGGAGAGGACAACCAGAGTCTTGACCTGAGTTTGCGAATTGCTCCCCCCAATCATTCTGACCCTCAAAGTGAGAGCATTCGCATGTTTGGTAATGGTTGTCATCTCAGCTCACCCGACGTCGTCGTTGATGGTAGAACGACGCTTGACAACTCTGTTTCGGCAGCAATTGGATCTTCTCAGCCATATGGCTATGCTGTGCCTTCAAATTCCTGTTTCTATACCATCTCCAGGGACAGAGCAGCAGAGACGAGAATGGGGGAGTGGCAAATCCATGGCCACTCAAATGGATTAACCTCTGTGCCATTCTTCTCTGCTGCAGCATCATCAGGATTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCATTTCATCCTCTGCTGTTGGTGAAATCCATTTCTCAGCTATTTTCCATCACCATGACAGCAACTTATCCAACTTCTACTGTAGGAATTGA 1518 47.23 MEESRRAEYTEWDVEFPLFSCLPCPCGGLFLFGNGIEHLKSLERRWSFKPMLNLNHDVVPSEMVTENFLNLPANRMETAGCFNSSPVVNGDPSASTTNVDEVFPFTFGKNSAVQESSTVKSLSISDDHRDQTMELFPLTDGLNSISDDHRDQTMEFFPLTEGLNSSSSTQKQWPGVSPSEFKHGDGGAPAQPQDQAMRKNRRGPRPRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDKAAIKFRGVDADINFSVRTYEEDIKQMSNITKEELIHNLRRRSNGFTRGSSKYRGVTLHKCGRWEARMGQFLGRKCNGKEAVTNFDPSSYMSEMAAETDTGEDNQSLDLSLRIAPPNHSDPQSESIRMFGNGCHLSSPDVVVDGRTTLDNSVSAAIGSSQPYGYAVPSNSCFYTISRDRAAETRMGEWQIHGHSNGLTSVPFFSAAASSGFLSSSSSSSSSSSSSAISSSAVGEIHFSAIFHHHDSNLSNFYCRN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1658640 1663071 + CmoCh06G003420.1 Cmo06g00342 383904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00342 505 MobiDBLite consensus disorder prediction 161 213 - -
Cmo06g00342 505 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 325 489 - -
Cmo06g00342 505 Gene3D AP2/ERF domain 209 268 IPR036955 GO:0003700|GO:0006355
Cmo06g00342 505 ProSiteProfiles AP2/ERF domain profile. 210 266 IPR001471 GO:0003700|GO:0006355
Cmo06g00342 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 325 - -
Cmo06g00342 505 Pfam AP2 domain 210 258 IPR001471 GO:0003700|GO:0006355
Cmo06g00342 505 SMART rav1_2 302 342 IPR001471 GO:0003700|GO:0006355
Cmo06g00342 505 SMART rav1_2 210 272 IPR001471 GO:0003700|GO:0006355
Cmo06g00342 505 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 74 325 - -
Cmo06g00342 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 325 489 - -
Cmo06g00342 505 SUPERFAMILY DNA-binding domain 209 267 IPR016177 GO:0003677
Cmo06g00342 505 CDD AP2 209 265 IPR001471 GO:0003700|GO:0006355
Cmo06g00342 505 MobiDBLite consensus disorder prediction 161 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00342 Cmo-Chr6:1658640 Cmo07g00709 Cmo-Chr7:3197835 1.09E-07 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo06g00342 Cmo-Chr6:1658640 5.93E-146 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo06g00342 Cmo-Chr6:1658640 2.78E-88 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo06g00342 Cmo-Chr6:1658640 4.97E-84 wgd
Cmo04g01310 Cmo-Chr4:6668332 Cmo06g00342 Cmo-Chr6:1658640 8.26E-43 wgd
Cmo04g00269 Cmo-Chr4:1358706 Cmo06g00342 Cmo-Chr6:1658640 1.25E-43 wgd
Cmo06g00342 Cmo-Chr6:1658640 Cmo07g00986 Cmo-Chr7:4842641 4.09E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9914 PF00847 AP2 4.00E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00342 K09284 - csv:101211242 514.612