Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00343 ATGGAGGCTAAGTTTCAGTTTCTGTTTCTTCTTTTTCTTTTTGATGTCTCCTTTGCTCAGATGCCAGTGATTATCCGTGCTCTGTTGCACTTTATATTGATTTTCGACTGTAATTTTCATGTCTTAAGTTCAAATGGCGTTATCTCCGAGTCTTTGATTTTCACTCTTTCCGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGACATTGGTCTGGAATGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACCTATCTGTTGCAAATGAGACGAGGAAGCAATACAGGACCTTAAGACACTTCCCTGCCGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTGTATGGTAACTTCGACAACAATAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGACAACAATTGTCATATCTGACGCCAACACCATAAAGGTTCGAGAGATCATATTTCTGGCTTCAACTCCTACTGTGAGTGTTTGTTTGTCAAATGCCACAACTGGGCAGCCGTTCATATCCACGCTTGAGCTTCGACAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTAAGTGTCTCGGCAAGGATCAATTTTGGAGCAGATTCCGAAGCCCCAGTAAGGTCAGTGAGCACTAGGATTCTACAAGTAGCCAACGGCAAATTAATAAAAGCAATAAGAATCTGGATTTTTTGTACCAACCTTTGTAGGGCCATCTATTGTGATAATGCCTTCAATATTTGGATTAAGTATCCTGATGACCCTTTTGACCGGATATGGGAGTCTGACTCTGTGAGAAAAGCAAATTATCTTGTTGATGTTGCTGCTGGTACTGAAAAAGTTTCCACTAAAATGCCAATAGATGTCAACAGAGATGAAAGACCACCTCAAAAAGTTATGCAGACGGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGTTTGAATTTGGATGGTTTTCCTGGCTTTGGATGGGCATTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCTACTGATACGAGAAAATTCAGGCTTGTACTTCCCGGCATGCCTGAAATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTATGAGCCTGGTTTTACCAACATAACCTTCCCTTTTGTATTATCTTTTAGGTTTGGGAAAACATCAGATTCTGTGTTGGGACCTCTGTTAAATGCCATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTATCGTCTTCAGATTTGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAGTGTAACTCTGATCCACAGCCAAGAATAGTTAAAATTTTATTGTCCAAAAAGAATTTGACAGGGAACATCCCTACAGACGTTGCAAAGTTGAACAGTTTAGTTGAATTGTGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGCTGTGTGAACTTGAAAATCCTCCATCTTGAGAACAATCAGTTGACGGGGGAGTTGCCTTCCTCATTAGTAAATCTTCCTAGTTTACGAGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCTTCCGGTCGTCTAAAAAAGGATCTAACTTTAGTCTACTCTGGAAACATTAATCTTCATGAAGGGGGGAAAAAGAACCACATTTATATCATTTTGGGTTCTGTAATTGGTGCTCTTGTCCTGCTCTTGGCAACTGTGGTATCTTGCTACTTTTTGCAAAGAAGAAGAAGAAAATCTCGTGAGCAAGCTGATGTACTTGAAGAATCCAAGCCTGCACAAAAATTTGCCTCTTCAAAGGGCGATGCTCCCAAGGAAACCGCACATTGCTTCGGTGTTAAAGAAATTGAAGAAGCAACAAGAGGTTTTGAAAGGAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATTGCAGTTAAAGTCTTGACTAGTAACTCCTTCCAGGGAAAGCGAGAATTTACAAATGAGTGGCCTGTATCGGTTGTGTTGGCCGCTTCCATAATACTTTCTTATATCATTTTCTTCCTTTTCTTTCATGTCAATAATGTGGTAGAAACATATGCGTAG 2244 39.97 MEAKFQFLFLLFLFDVSFAQMPVIIRALLHFILIFDCNFHVLSSNGVISESLIFTLSGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINLSVANETRKQYRTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWTTIVISDANTIKVREIIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRSVSTRILQVANGKLIKAIRIWIFCTNLCRAIYCDNAFNIWIKYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKMPIDVNRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAFTYFAEIEDLGPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGFTNITFPFVLSFRFGKTSDSVLGPLLNAMEINKYLEKSDGSLDGAVVASVISKLSSSDLDEGGDPCMPVPWSWLQCNSDPQPRIVKILLSKKNLTGNIPTDVAKLNSLVELWLDGNSFVGPIPDFTGCVNLKILHLENNQLTGELPSSLVNLPSLRELYVQNNMLSGTVPSGRLKKDLTLVYSGNINLHEGGKKNHIYIILGSVIGALVLLLATVVSCYFLQRRRRKSREQADVLEESKPAQKFASSKGDAPKETAHCFGVKEIEEATRGFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGKREFTNEWPVSVVLAASIILSYIIFFLFFHVNNVVETYA 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1665485 1669850 + CmoCh06G003430.1 Cmo06g00343 383905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00343 747 Gene3D Ribonuclease Inhibitor 447 596 IPR032675 -
Cmo06g00343 747 PANTHER OS07G0107800 PROTEIN-RELATED 54 237 - -
Cmo06g00343 747 MobiDBLite consensus disorder prediction 633 655 - -
Cmo06g00343 747 Pfam Leucine rich repeat 527 567 IPR001611 GO:0005515
Cmo06g00343 747 Gene3D Phosphorylase Kinase; domain 1 645 729 - -
Cmo06g00343 747 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Cmo06g00343 747 PANTHER TYROSINE KINASE DOMAIN PROTEIN 269 716 - -
Cmo06g00343 747 PANTHER TYROSINE KINASE DOMAIN PROTEIN 54 237 - -
Cmo06g00343 747 SUPERFAMILY Protein kinase-like (PK-like) 659 719 IPR011009 -
Cmo06g00343 747 PANTHER OS07G0107800 PROTEIN-RELATED 269 716 - -
Cmo06g00343 747 Pfam Malectin-like domain 266 434 IPR024788 -
Cmo06g00343 747 Pfam Malectin-like domain 62 234 IPR024788 -
Cmo06g00343 747 ProSiteProfiles Protein kinase domain profile. 671 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00343 747 SUPERFAMILY L domain-like 470 576 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00343 Cmo-Chr6:1665485 Cmo18g00711 Cmo-Chr18:8942293 0 dispersed
Cmo14g00177 Cmo-Chr14:803287 Cmo06g00343 Cmo-Chr6:1665485 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00343 - - csv:101212456 1124.0