Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00346 ATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAATCAGTGAAAAGTGAATAG 489 46.83 MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTPGAQVAHQGTFSQGVNYGSSQSVKSE 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1673581 1677486 + CmoCh06G003460.1 Cmo06g00346 383908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00346 162 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo06g00346 162 Gene3D Histone, subunit A 16 150 IPR009072 GO:0046982
Cmo06g00346 162 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 155 - -
Cmo06g00346 162 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cmo06g00346 162 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cmo06g00346 162 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cmo06g00346 162 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cmo06g00346 162 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo06g00346 162 MobiDBLite consensus disorder prediction 116 162 - -
Cmo06g00346 162 MobiDBLite consensus disorder prediction 116 130 - -
Cmo06g00346 162 MobiDBLite consensus disorder prediction 1 28 - -
Cmo06g00346 162 MobiDBLite consensus disorder prediction 141 162 - -
Cmo06g00346 162 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00346 Cmo-Chr6:1673581 Cmo20g00682 Cmo-Chr20:3345325 2.46E-54 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo06g00346 Cmo-Chr6:1673581 1.44E-110 wgd
Cmo04g01312 Cmo-Chr4:6677894 Cmo06g00346 Cmo-Chr6:1673581 2.06E-73 wgd
Cmo04g00271 Cmo-Chr4:1368977 Cmo06g00346 Cmo-Chr6:1673581 1.99E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9915 PF00808 CBFD_NFYB_HMF 6.80E-28 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00346 K08065 - csv:101212699 297.745