Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00346 | ATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAATCAGTGAAAAGTGAATAG | 489 | 46.83 | MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTPGAQVAHQGTFSQGVNYGSSQSVKSE | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1673581 | 1677486 | + | CmoCh06G003460.1 | Cmo06g00346 | 383908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00346 | 162 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cmo06g00346 | 162 | Gene3D | Histone, subunit A | 16 | 150 | IPR009072 | GO:0046982 | |
Cmo06g00346 | 162 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 155 | - | - | |
Cmo06g00346 | 162 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Cmo06g00346 | 162 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Cmo06g00346 | 162 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Cmo06g00346 | 162 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Cmo06g00346 | 162 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 155 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cmo06g00346 | 162 | MobiDBLite | consensus disorder prediction | 116 | 162 | - | - | |
Cmo06g00346 | 162 | MobiDBLite | consensus disorder prediction | 116 | 130 | - | - | |
Cmo06g00346 | 162 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cmo06g00346 | 162 | MobiDBLite | consensus disorder prediction | 141 | 162 | - | - | |
Cmo06g00346 | 162 | SUPERFAMILY | Histone-fold | 27 | 126 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00346 | Cmo-Chr6:1673581 | Cmo20g00682 | Cmo-Chr20:3345325 | 2.46E-54 | dispersed | |
Cmo14g00178 | Cmo-Chr14:811623 | Cmo06g00346 | Cmo-Chr6:1673581 | 1.44E-110 | wgd | |
Cmo04g01312 | Cmo-Chr4:6677894 | Cmo06g00346 | Cmo-Chr6:1673581 | 2.06E-73 | wgd | |
Cmo04g00271 | Cmo-Chr4:1368977 | Cmo06g00346 | Cmo-Chr6:1673581 | 1.99E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9915 | PF00808 | CBFD_NFYB_HMF | 6.80E-28 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00346 | K08065 | - | csv:101212699 | 297.745 |