Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00348 | ATGGAAAATGTCCGGAGATCATACAGAGCGAAGATAGGCATGGAGCAAGCGTTTTCAGACTTCGACATAGCTGGAGACATCTTTGATTTGTACTTCCCCCATACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTTATTTTCTTCTTTTCTTCTCCGGCAGGTCGGCATCTTGCTTCACAGGTAGTTCCTGCAAGGTTGGATGCTATTGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACACTTCCGAAAGATTTGCGATGAACATGAATTATACCTAATGTTAGAGAAAGATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGACCAAATGGGCGCACAATTTAGAAGTTGTCGCAAAATTTCTAGTCCGATTGCACAACTATTCAGAATCCATGCTTGCATTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTTAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGCTGGATGGGTGCAAAAGCAAAACATTTATTCCCATTCGATCTACAGCTGAAGCAATTGACTTCCAGAAAATACGGTTGCAAGAACTCACTAAATCTGATGACCATGAAGAAGGAAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGGAAAATCGAAAGGCAAAAGTCAAGGATTGTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCACAATCTTCACCTGAGGAGATGCAAGATTCTAACTCCAATGCAAGAGCAACGGATTTGCTTGACTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCCGATGTTTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTCTATTTGGTGGTGTTCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGCAAAAGTCAAATACTACAAGCAGCTGCAGCTATTTCTCCACGTGGAATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGTATGTCTTTTCTTGAACCTTACAACTCTACTTTCTCCACAGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTATTGGAAGCCATGGAACAACAATGTGTATCGATTGCAAAAGCTGGGCTGGTAGCAAGTCTATCAGCACGTACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGCGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGAGCTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGGTAATGAGTAATCAATTCGTGATAAACGTCTGTTCTGATACCGATAAGACTTTTGAGCAGAAGGCAACAATGTGCTTGAACAAACTGAGGAATAAGGATGTCTCATATTTTGGCAGCTACATCAAGTATGATATTTGTCTTTCTTGCAGCTTCATGCAGGATATGGGGAACGCGCTTCTACAGCAAAAAGATTACGTAAAGGTATATATAACTCCTTTGGCCTTAAAGAATGTACCAATGGAGAATGATGGAAAAGGAGATGCTTGTTCAAAAGGCGAGTCGTTAGTTTCAAGACTGAGATTGGACCGAGCGAAAGATAGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTCTTCCCCAGGATGTCAAAGCCGGCGGCAGACATTTTGCAAAGATTTTACTTACAACTGCGTGACCAGAATACATCAGCTGATGGTACACCAATTACAGCAAGGCAACTCGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGAGTAGACCTCAGGGAAGAAATTACAGTACAGGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTACGTAGATGAACATGGAGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTTTGAGTGCACTCAACAAGCAATCAGATTTGCAGCAGAAAGATTGTTTCTCCATCTCCGAAATATATATCTTGGCAGATAGGATTGGTCTGCAAGTACCCGACATTGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGACCAAAGACATATCAGGTGCTATCCTCATCTTACACCAGTCAATCTACAAGGTCTAGGGGATAA | 2622 | 41.19 | MENVRRSYRAKIGMEQAFSDFDIAGDIFDLYFPHTVFTVENEWLKLISQLIFFFSSPAGRHLASQVVPARLDAIDDGRGIFILSIDFQHFRKICDEHELYLMLEKDPKVALKCMSAALHQVMRTKWAHNLEVVAKFLVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFIPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKGKSQGLYYLYLEAVSIKNSKSQSSPEEMQDSNSNARATDLLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGMSFLEPYNSTFSTGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMRAALLSRFDLVFILLDKPDEFLDKRVSEHIMSVMSNQFVINVCSDTDKTFEQKATMCLNKLRNKDVSYFGSYIKYDICLSCSFMQDMGNALLQQKDYVKVYITPLALKNVPMENDGKGDACSKGESLVSRLRLDRAKDSDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQRFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSDLQQKDCFSISEIYILADRIGLQVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG | 873 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1687892 | 1694103 | - | CmoCh06G003480.1 | Cmo06g00348 | 383910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00348 | 873 | Gene3D | - | 334 | 782 | IPR027417 | - | |
Cmo06g00348 | 873 | SMART | AAA_5 | 395 | 561 | IPR003593 | - | |
Cmo06g00348 | 873 | Pfam | MCM OB domain | 150 | 279 | IPR033762 | - | |
Cmo06g00348 | 873 | Coils | Coil | 480 | 500 | - | - | |
Cmo06g00348 | 873 | CDD | MCM8 | 360 | 772 | - | - | |
Cmo06g00348 | 873 | SUPERFAMILY | Nucleic acid-binding proteins | 79 | 280 | IPR012340 | - | |
Cmo06g00348 | 873 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 395 | 779 | IPR027417 | - | |
Cmo06g00348 | 873 | PANTHER | DNA HELICASE MCM8 | 16 | 868 | - | - | |
Cmo06g00348 | 873 | Gene3D | - | 177 | 227 | - | - | |
Cmo06g00348 | 873 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 16 | 868 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | SMART | mcm | 146 | 774 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 546 | 554 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 519 | 531 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 394 | 409 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 495 | 508 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 468 | 482 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | Pfam | MCM AAA-lid domain | 690 | 773 | IPR041562 | - | |
Cmo06g00348 | 873 | ProSiteProfiles | MCM family domain profile. | 356 | 572 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo06g00348 | 873 | Gene3D | - | 150 | 280 | IPR012340 | - | |
Cmo06g00348 | 873 | Pfam | MCM P-loop domain | 354 | 575 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00348 | Cmo-Chr6:1687892 | Cmo19g00696 | Cmo-Chr19:7351871 | 1.36E-06 | dispersed | |
Cmo14g00182 | Cmo-Chr14:831536 | Cmo06g00348 | Cmo-Chr6:1687892 | 1.55E-29 | transposed | |
Cmo14g00180 | Cmo-Chr14:825597 | Cmo06g00348 | Cmo-Chr6:1687892 | 9.00E-37 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00348 | K10737 | - | csv:101211972 | 1335.47 |