Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00348 ATGGAAAATGTCCGGAGATCATACAGAGCGAAGATAGGCATGGAGCAAGCGTTTTCAGACTTCGACATAGCTGGAGACATCTTTGATTTGTACTTCCCCCATACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTTATTTTCTTCTTTTCTTCTCCGGCAGGTCGGCATCTTGCTTCACAGGTAGTTCCTGCAAGGTTGGATGCTATTGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACACTTCCGAAAGATTTGCGATGAACATGAATTATACCTAATGTTAGAGAAAGATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGACCAAATGGGCGCACAATTTAGAAGTTGTCGCAAAATTTCTAGTCCGATTGCACAACTATTCAGAATCCATGCTTGCATTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTTAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGCTGGATGGGTGCAAAAGCAAAACATTTATTCCCATTCGATCTACAGCTGAAGCAATTGACTTCCAGAAAATACGGTTGCAAGAACTCACTAAATCTGATGACCATGAAGAAGGAAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGGAAAATCGAAAGGCAAAAGTCAAGGATTGTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCACAATCTTCACCTGAGGAGATGCAAGATTCTAACTCCAATGCAAGAGCAACGGATTTGCTTGACTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCCGATGTTTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTCTATTTGGTGGTGTTCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGCAAAAGTCAAATACTACAAGCAGCTGCAGCTATTTCTCCACGTGGAATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGTATGTCTTTTCTTGAACCTTACAACTCTACTTTCTCCACAGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTATTGGAAGCCATGGAACAACAATGTGTATCGATTGCAAAAGCTGGGCTGGTAGCAAGTCTATCAGCACGTACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGCGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGAGCTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGGTAATGAGTAATCAATTCGTGATAAACGTCTGTTCTGATACCGATAAGACTTTTGAGCAGAAGGCAACAATGTGCTTGAACAAACTGAGGAATAAGGATGTCTCATATTTTGGCAGCTACATCAAGTATGATATTTGTCTTTCTTGCAGCTTCATGCAGGATATGGGGAACGCGCTTCTACAGCAAAAAGATTACGTAAAGGTATATATAACTCCTTTGGCCTTAAAGAATGTACCAATGGAGAATGATGGAAAAGGAGATGCTTGTTCAAAAGGCGAGTCGTTAGTTTCAAGACTGAGATTGGACCGAGCGAAAGATAGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTCTTCCCCAGGATGTCAAAGCCGGCGGCAGACATTTTGCAAAGATTTTACTTACAACTGCGTGACCAGAATACATCAGCTGATGGTACACCAATTACAGCAAGGCAACTCGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGAGTAGACCTCAGGGAAGAAATTACAGTACAGGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTACGTAGATGAACATGGAGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTTTGAGTGCACTCAACAAGCAATCAGATTTGCAGCAGAAAGATTGTTTCTCCATCTCCGAAATATATATCTTGGCAGATAGGATTGGTCTGCAAGTACCCGACATTGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGACCAAAGACATATCAGGTGCTATCCTCATCTTACACCAGTCAATCTACAAGGTCTAGGGGATAA 2622 41.19 MENVRRSYRAKIGMEQAFSDFDIAGDIFDLYFPHTVFTVENEWLKLISQLIFFFSSPAGRHLASQVVPARLDAIDDGRGIFILSIDFQHFRKICDEHELYLMLEKDPKVALKCMSAALHQVMRTKWAHNLEVVAKFLVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFIPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKGKSQGLYYLYLEAVSIKNSKSQSSPEEMQDSNSNARATDLLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGMSFLEPYNSTFSTGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMRAALLSRFDLVFILLDKPDEFLDKRVSEHIMSVMSNQFVINVCSDTDKTFEQKATMCLNKLRNKDVSYFGSYIKYDICLSCSFMQDMGNALLQQKDYVKVYITPLALKNVPMENDGKGDACSKGESLVSRLRLDRAKDSDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQRFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSDLQQKDCFSISEIYILADRIGLQVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1687892 1694103 - CmoCh06G003480.1 Cmo06g00348 383910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00348 873 Gene3D - 334 782 IPR027417 -
Cmo06g00348 873 SMART AAA_5 395 561 IPR003593 -
Cmo06g00348 873 Pfam MCM OB domain 150 279 IPR033762 -
Cmo06g00348 873 Coils Coil 480 500 - -
Cmo06g00348 873 CDD MCM8 360 772 - -
Cmo06g00348 873 SUPERFAMILY Nucleic acid-binding proteins 79 280 IPR012340 -
Cmo06g00348 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 779 IPR027417 -
Cmo06g00348 873 PANTHER DNA HELICASE MCM8 16 868 - -
Cmo06g00348 873 Gene3D - 177 227 - -
Cmo06g00348 873 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 16 868 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 SMART mcm 146 774 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 PRINTS Mini-chromosome maintenance (MCM) protein family signature 546 554 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 PRINTS Mini-chromosome maintenance (MCM) protein family signature 519 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 PRINTS Mini-chromosome maintenance (MCM) protein family signature 394 409 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 PRINTS Mini-chromosome maintenance (MCM) protein family signature 495 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 PRINTS Mini-chromosome maintenance (MCM) protein family signature 468 482 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 Pfam MCM AAA-lid domain 690 773 IPR041562 -
Cmo06g00348 873 ProSiteProfiles MCM family domain profile. 356 572 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo06g00348 873 Gene3D - 150 280 IPR012340 -
Cmo06g00348 873 Pfam MCM P-loop domain 354 575 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00348 Cmo-Chr6:1687892 Cmo19g00696 Cmo-Chr19:7351871 1.36E-06 dispersed
Cmo14g00182 Cmo-Chr14:831536 Cmo06g00348 Cmo-Chr6:1687892 1.55E-29 transposed
Cmo14g00180 Cmo-Chr14:825597 Cmo06g00348 Cmo-Chr6:1687892 9.00E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00348 K10737 - csv:101211972 1335.47