Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00353 ATGGGAAGGAAAGGAAATTGGTTTAAAACTTTGAAGAAAGCTCTCAGCCCCAGCTCCAAAAGGAAGAAAGACCAGAAGACTAAATTGTCTGGAAAACAAAAACACCCCAGTGTATGTTCTACTCCTACATTGACTATTGCAAATCAGATAACTCAGCAAGAAAAGGTAAAATCGACCTGTGAGGTGAATGAAGACCACTGCAAAGCTCATTCTGTTCCAATTTCGAATTCCACGGGCATGGCTTCTACAGCCGGCACACAGGTTGTCCAGACCACTACTGTGACTCAATTCACCAGAAAATCTAGAGAGGAAACGGCAGCAATCAAGATTCAATCAGTTTTTCGTGGATATCTGGCAAGATCAGAAATACGAACCTTAAGAGGGCTGTTGAGATTGAAATTATTGATGGAGAGTTCAGTTCTGAATCGTCAAGCCATGAACACCATCCGGTGTATGCAAGTTTTTGTCCGTGTCCATTCCCAGATCCGGTCAAGAAGGTTGAGGAAGCTGGAGGAAAATCAGGCTCTCCAGAAACAACTCCTACAAAAACATACAAAAGAACAAGAGAATTCTCAGGTTGGGAAAGGGTGGAACGACAGCACACAATCAAAAGAACAAGTTGAGGCTAAACTACTAGGCAAGCATCAAGCAGCTATGAGAAGAGAGAGAGCGTTGGCTTATGCCTTTTCTCGACAGAAAATCTGGAGAAATTCTTCGAGGTCAACAAATCCACTATTCACAGATCCGAACAATCCCACCTGGGGATGGAGCTGGTTGGAGAGATGGATGGCAGCTCAACAATGGGGGGATGCGAGCTCTGGTAATGTTTGTGGAGAAATTAATAAAGCCGATGCTCAATCCAAACAGAGCTCGGAGATAAATTCGCCAACAGTAAGCCGATCTGGAAGCCGTAGATATACATTCCAGCCCCTCACGATTCATTCCAGACGTAGATCAGTTGCAGAGGCGAATCAACTGAAGCCATCAAGCACACGAAAGAGCTCAGTTCCAGATGATTCTCTCCAAGCTAATGTTCAATTTGAACTGAGCTCGGAGGCGAATTCGTCAACAGCAAGCCGATCCGAGAGCCGCAGATATACTTTCCAGTCCTTCTCAACTTCTTCCAGACAAAGTTCAGTCGCAGAGCCAAAGAAATCGAAATCATCAACCATAAAAAAGAACTCGGTTCCAGAAATTGAAGGATTCCAGCTGACCTCGAAGGCAAATTCGCTAACAGCAAGTCGATCCGAGAGCCACAGATATACCTTCCCGTCCCTCTCAACTCCTTCTCCGCGAAGATCAGTCGCAGAGGCAATGAAATCAAAGCAATTAGGCGCCAGAAATAGCACGATTCCAGATGATGACAGCAAGAGCCTGGCAAGTATAAAATCAAACAATGGAGGACCTCGATCATCCGTATGGGACGAAGAAAGCCAAAACAGTTCACAAAATCTTCCGAGTTACATGACGTTCACCGCATCGGCAAGAGCCAAATCGAAGCTTCATACTCCATTCGAGTCGGAGAAGAATGGAGCTCGAGAAATAACGTCGTTTAGTTCATCTGCTAAGAAACAACTCTTGTATCCGCCATCTCCGGCCGGGTCGAGGCGCTATTCCAACCGTCTGAAGGTGGATATAGCGGCTTGA 1647 45.54 MGRKGNWFKTLKKALSPSSKRKKDQKTKLSGKQKHPSVCSTPTLTIANQITQQEKVKSTCEVNEDHCKAHSVPISNSTGMASTAGTQVVQTTTVTQFTRKSREETAAIKIQSVFRGYLARSEIRTLRGLLRLKLLMESSVLNRQAMNTIRCMQVFVRVHSQIRSRRLRKLEENQALQKQLLQKHTKEQENSQVGKGWNDSTQSKEQVEAKLLGKHQAAMRRERALAYAFSRQKIWRNSSRSTNPLFTDPNNPTWGWSWLERWMAAQQWGDASSGNVCGEINKADAQSKQSSEINSPTVSRSGSRRYTFQPLTIHSRRRSVAEANQLKPSSTRKSSVPDDSLQANVQFELSSEANSSTASRSESRRYTFQSFSTSSRQSSVAEPKKSKSSTIKKNSVPEIEGFQLTSKANSLTASRSESHRYTFPSLSTPSPRRSVAEAMKSKQLGARNSTIPDDDSKSLASIKSNNGGPRSSVWDEESQNSSQNLPSYMTFTASARAKSKLHTPFESEKNGAREITSFSSSAKKQLLYPPSPAGSRRYSNRLKVDIAA 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1719317 1722943 - CmoCh06G003530.1 Cmo06g00353 383915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00353 548 MobiDBLite consensus disorder prediction 181 202 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 510 526 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 443 484 - -
Cmo06g00353 548 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 332 - -
Cmo06g00353 548 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 422 545 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 283 393 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 410 434 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 1 38 - -
Cmo06g00353 548 Coils Coil 167 187 - -
Cmo06g00353 548 SMART iq_5 102 124 IPR000048 GO:0005515
Cmo06g00353 548 MobiDBLite consensus disorder prediction 283 385 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 410 484 - -
Cmo06g00353 548 Gene3D - 92 133 - -
Cmo06g00353 548 PANTHER IQ-DOMAIN 5-RELATED 1 332 - -
Cmo06g00353 548 PANTHER IQ-DOMAIN 5-RELATED 422 545 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 500 548 - -
Cmo06g00353 548 Pfam IQ calmodulin-binding motif 106 123 IPR000048 GO:0005515
Cmo06g00353 548 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00353 - - - cmax:111498714 969.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00353 Cmo07g00981 CCT
Cmo06g00353 Cmo07g00981 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02721 Cmo-Chr4:19731029 Cmo06g00353 Cmo-Chr6:1719317 3.34E-09 dispersed
Cmo06g00353 Cmo-Chr6:1719317 Cmo18g00887 Cmo-Chr18:10128215 4.47E-53 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo06g00353 Cmo-Chr6:1719317 2.19E-10 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo06g00353 Cmo-Chr6:1719317 5.16E-47 wgd
Cmo06g00353 Cmo-Chr6:1719317 Cmo07g00981 Cmo-Chr7:4829625 1.08E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013853 0 1 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00353 Cmo_Chr06 FPKM 19.80205 21.677946 23.02449 22.814978 21.768257 20.849705 24.052258 24.280273 22.476961 22.740732