Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00353 ATGGGAAGGAAAGGAAATTGGTTTAAAACTTTGAAGAAAGCTCTCAGCCCCAGCTCCAAAAGGAAGAAAGACCAGAAGACTAAATTGTCTGGAAAACAAAAACACCCCAGTGTATGTTCTACTCCTACATTGACTATTGCAAATCAGATAACTCAGCAAGAAAAGGTAAAATCGACCTGTGAGGTGAATGAAGACCACTGCAAAGCTCATTCTGTTCCAATTTCGAATTCCACGGGCATGGCTTCTACAGCCGGCACACAGGTTGTCCAGACCACTACTGTGACTCAATTCACCAGAAAATCTAGAGAGGAAACGGCAGCAATCAAGATTCAATCAGTTTTTCGTGGATATCTGGCAAGATCAGAAATACGAACCTTAAGAGGGCTGTTGAGATTGAAATTATTGATGGAGAGTTCAGTTCTGAATCGTCAAGCCATGAACACCATCCGGTGTATGCAAGTTTTTGTCCGTGTCCATTCCCAGATCCGGTCAAGAAGGTTGAGGAAGCTGGAGGAAAATCAGGCTCTCCAGAAACAACTCCTACAAAAACATACAAAAGAACAAGAGAATTCTCAGGTTGGGAAAGGGTGGAACGACAGCACACAATCAAAAGAACAAGTTGAGGCTAAACTACTAGGCAAGCATCAAGCAGCTATGAGAAGAGAGAGAGCGTTGGCTTATGCCTTTTCTCGACAGAAAATCTGGAGAAATTCTTCGAGGTCAACAAATCCACTATTCACAGATCCGAACAATCCCACCTGGGGATGGAGCTGGTTGGAGAGATGGATGGCAGCTCAACAATGGGGGGATGCGAGCTCTGGTAATGTTTGTGGAGAAATTAATAAAGCCGATGCTCAATCCAAACAGAGCTCGGAGATAAATTCGCCAACAGTAAGCCGATCTGGAAGCCGTAGATATACATTCCAGCCCCTCACGATTCATTCCAGACGTAGATCAGTTGCAGAGGCGAATCAACTGAAGCCATCAAGCACACGAAAGAGCTCAGTTCCAGATGATTCTCTCCAAGCTAATGTTCAATTTGAACTGAGCTCGGAGGCGAATTCGTCAACAGCAAGCCGATCCGAGAGCCGCAGATATACTTTCCAGTCCTTCTCAACTTCTTCCAGACAAAGTTCAGTCGCAGAGCCAAAGAAATCGAAATCATCAACCATAAAAAAGAACTCGGTTCCAGAAATTGAAGGATTCCAGCTGACCTCGAAGGCAAATTCGCTAACAGCAAGTCGATCCGAGAGCCACAGATATACCTTCCCGTCCCTCTCAACTCCTTCTCCGCGAAGATCAGTCGCAGAGGCAATGAAATCAAAGCAATTAGGCGCCAGAAATAGCACGATTCCAGATGATGACAGCAAGAGCCTGGCAAGTATAAAATCAAACAATGGAGGACCTCGATCATCCGTATGGGACGAAGAAAGCCAAAACAGTTCACAAAATCTTCCGAGTTACATGACGTTCACCGCATCGGCAAGAGCCAAATCGAAGCTTCATACTCCATTCGAGTCGGAGAAGAATGGAGCTCGAGAAATAACGTCGTTTAGTTCATCTGCTAAGAAACAACTCTTGTATCCGCCATCTCCGGCCGGGTCGAGGCGCTATTCCAACCGTCTGAAGGTGGATATAGCGGCTTGA 1647 45.54 MGRKGNWFKTLKKALSPSSKRKKDQKTKLSGKQKHPSVCSTPTLTIANQITQQEKVKSTCEVNEDHCKAHSVPISNSTGMASTAGTQVVQTTTVTQFTRKSREETAAIKIQSVFRGYLARSEIRTLRGLLRLKLLMESSVLNRQAMNTIRCMQVFVRVHSQIRSRRLRKLEENQALQKQLLQKHTKEQENSQVGKGWNDSTQSKEQVEAKLLGKHQAAMRRERALAYAFSRQKIWRNSSRSTNPLFTDPNNPTWGWSWLERWMAAQQWGDASSGNVCGEINKADAQSKQSSEINSPTVSRSGSRRYTFQPLTIHSRRRSVAEANQLKPSSTRKSSVPDDSLQANVQFELSSEANSSTASRSESRRYTFQSFSTSSRQSSVAEPKKSKSSTIKKNSVPEIEGFQLTSKANSLTASRSESHRYTFPSLSTPSPRRSVAEAMKSKQLGARNSTIPDDDSKSLASIKSNNGGPRSSVWDEESQNSSQNLPSYMTFTASARAKSKLHTPFESEKNGAREITSFSSSAKKQLLYPPSPAGSRRYSNRLKVDIAA 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1719317 1722943 - CmoCh06G003530.1 Cmo06g00353 383915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00353 548 MobiDBLite consensus disorder prediction 181 202 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 510 526 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 443 484 - -
Cmo06g00353 548 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 332 - -
Cmo06g00353 548 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 422 545 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 283 393 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 410 434 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 1 38 - -
Cmo06g00353 548 Coils Coil 167 187 - -
Cmo06g00353 548 SMART iq_5 102 124 IPR000048 GO:0005515
Cmo06g00353 548 MobiDBLite consensus disorder prediction 283 385 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 410 484 - -
Cmo06g00353 548 Gene3D - 92 133 - -
Cmo06g00353 548 PANTHER IQ-DOMAIN 5-RELATED 1 332 - -
Cmo06g00353 548 PANTHER IQ-DOMAIN 5-RELATED 422 545 - -
Cmo06g00353 548 MobiDBLite consensus disorder prediction 500 548 - -
Cmo06g00353 548 Pfam IQ calmodulin-binding motif 106 123 IPR000048 GO:0005515
Cmo06g00353 548 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00353 Cmo07g00981 CCT
Cmo06g00353 Cmo07g00981 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02721 Cmo-Chr4:19731029 Cmo06g00353 Cmo-Chr6:1719317 3.34E-09 dispersed
Cmo06g00353 Cmo-Chr6:1719317 Cmo18g00887 Cmo-Chr18:10128215 4.47E-53 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo06g00353 Cmo-Chr6:1719317 2.19E-10 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo06g00353 Cmo-Chr6:1719317 5.16E-47 wgd
Cmo06g00353 Cmo-Chr6:1719317 Cmo07g00981 Cmo-Chr7:4829625 1.08E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00353 - - cmax:111498714 969.533