Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00365 ATGTCAAGTAATCCTTTTTCTCTTCTCTCTTCCACTACCACTCCCTTTGCTCCACACCAAGATGCTAACCCTAAATCGAAACCCTCGACCGCAACGAAGAAGAAACGCAACCTCCCGGGAACCCCAGATCCAGATGCTGAGGTTATTGCTTTGTCGCCGAAATCGCTTATGGCGACGAATAGATTCGTATGCGAAATTTGCAACAAGGGCTTTCAAAGAGATCAGAATCTACAACTTCACCGACGAGGGCATAACCTTCCGTGGAAGCTACGACAGCGGACAAACAAGGAGATGATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGTGTACATCATGATCCATCGCGAGCCCTCGGTGACTTGACCGGGATAAAGAAACATTTCAGTAGGAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATACGCGGTTCAATCCGATTGGAAAGCTCACTCCAAAACTTGTGGGACTCGAGAATATAAGTGCGATTGTGGAACTCTTTTTTCCCGCTCAAGATTTGAACCCCTAACCTCTCAATTGAAATTACTAATAGTTCGATATAAACACATAAACGAATCGATCGAACTCGAAAATCAAACACATTTTTCGATTATCTCTGACCAGACATTGATTTATAACAAAATTGGCAATGATTGGAGAATTAAATGTTGGATGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAATTTCAGCAACAAATATTCTCAATAATTTAAGAAATGATTCAATTGTTCTTCATCAACAAGAACAAAACAACCTTGAATCTCTTGGAGATGTTCCTGGGCTTTCCCAATTCAGTAATTCAGATAATTTCTTGAGAGATTTTGAAGAACACCAACACAAGAACAGATCTCCATTGTCCCTTTGGTTAAACCAAGCTTCTGTTGATAATGCAATCAACAACAACAACAACATTTCCCACTTTTTTGGAGCTTCTTCTTCCTCCTCCAATCTTTTCGGATCGATGACCGAAAGCGGGCTTTCAGTATTGCCGCTGATTGAGAAGGAAGACGTTGACAATAAGGGAAGTTTGTCGAAGGCTACGGCAGCCGCCGCGTTATTAGGTCAATCTTCTCAGTCGTTCGTTTCGTCTTCTCCGATGTCAGCCACCGCCCTTCTACAAAAAGCTGCTCTTATGGGCTCTACTAGAAGCAGCAACAATAATAATTCTCCGCTCTTTGGAGCTGGCGCGTTCGGAGTAATGAGCTCGTCGTCTTCGTCATTGAACTCGTTTAATAAATCTAGAAGCCCGACGATGGCCGACTCGGTGCAGATGGTTGGTAACAACTCCGACTTGAGCTCGGATTGCCTCAACCAACTTCTACTACCACCAAATGATACTAACAAAATGAGAAGTAGCGGTCAAACGAGGGATTTCCTCGGTGTCGGAGGAGGAGAACCGCCTCGGCCACCGTTCCTCCCACCGGAGCTTGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAATTCAACCACTAA 1563 43.76 MSSNPFSLLSSTTTPFAPHQDANPKSKPSTATKKKRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEMIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRSRFEPLTSQLKLLIVRYKHINESIELENQTHFSIISDQTLIYNKIGNDWRIKCWMKDSFITHRAFCDALAEESARITTISATNILNNLRNDSIVLHQQEQNNLESLGDVPGLSQFSNSDNFLRDFEEHQHKNRSPLSLWLNQASVDNAINNNNNISHFFGASSSSSNLFGSMTESGLSVLPLIEKEDVDNKGSLSKATAAAALLGQSSQSFVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSLNSFNKSRSPTMADSVQMVGNNSDLSSDCLNQLLLPPNDTNKMRSSGQTRDFLGVGGGEPPRPPFLPPELAKFAAINSTMGLSQFNH 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1771849 1774055 + CmoCh06G003650.1 Cmo06g00365 383927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00365 520 MobiDBLite consensus disorder prediction 1 46 - -
Cmo06g00365 520 Gene3D Classic Zinc Finger 41 115 - -
Cmo06g00365 520 PANTHER ZINC FINGER PROTEIN JACKDAW 5 510 IPR033243 GO:0003700
Cmo06g00365 520 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cmo06g00365 520 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cmo06g00365 520 MobiDBLite consensus disorder prediction 1 27 - -
Cmo06g00365 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cmo06g00365 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 510 - -
Cmo06g00365 520 Gene3D Classic Zinc Finger 116 188 - -
Cmo06g00365 520 SMART c2h2final6 62 84 IPR013087 -
Cmo06g00365 520 SMART c2h2final6 139 159 IPR013087 -
Cmo06g00365 520 SMART c2h2final6 104 134 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00365 Cmo07g00978 CCT
Cmo06g00365 Cmo07g00978 ECH
Cmo06g00365 Cmo14g00196 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00365 Cmo-Chr6:1771849 Cmo14g01296 Cmo-Chr14:10837630 3.69E-106 dispersed
Cmo14g00196 Cmo-Chr14:889620 Cmo06g00365 Cmo-Chr6:1771849 0 wgd
Cmo06g00365 Cmo-Chr6:1771849 Cmo07g00978 Cmo-Chr7:4810001 1.55E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9917 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00365 K25870 - csv:101213422 654.055