Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00371 ATGGCTAATAACGACATCGAAGTCGGATCTCGGGGGTCCCTGCCGAGGAAGGACTATTTCGAGCCGCTTCCGGCGCCAATGATCGATATGGAGGAGTTGGCCAAATGGTCCTTTTACAGAGCCATAATCGCCGAGTTCGTCGCCACTCTTTTGTTTCTCTACGTCGCCGTTTTGACGGTCATCGGTAATAAAACCCAGACCGATCCCCTCAACGGCGGTAACCTCTGCGGCGGAGTTGGCACCCTCGGAATCGCCTGGGTCTTCGGCGGTATGATCTTCGTTCTCGTTTACTGCACCGCCGGCATCTCTGGTAATTCCCTTATCTTCATTTTTCCCCAATTTTCAAAACCCGGAAAATTAACCGGAGGACACATAAACCCGGCGGTGACATTCGGAATGTTTCTGGGGAGAAAGATATCGTTGATTCGCGCCTTGCTCTACATTATAGCTCAGTGCTTGGGGGCGTTATGCGGCTGCGCCTTAGTCAAGTCACTACAGAGAGATCGCTACAACCACTATGGCGGTGCTGCCAACCAGCTCGTTGACGGCTACAGCAAAGGCACCGGTCTCGCCGTCGAGATCATCGGCACCTTCGTCCTTCTCTACACCGTCTTCTCCGCCACTGATCCCAAACGCAATGCCCGAGATTCCTACGTTCCTGTGCTGGCTCCACTCCCCATTGGGTTCACTGTTTTCATGGTTCATCTCGCTACAATTCCGATCACTGGCACTGGCATCAATCCAGCTCGAAGCTTCGGCGCCGCCGTGATCATCAACGATAAACAAATCTGGAAAGATCATTGGATCTTCTGGGTCGGACCGCTGATCGGAGCAACCATTGCTACGATGTATTACCAGTATGTTCTTCGAGCCTCCGCCGTGAAAGCAATTGGATCCTTCAGAAGCACACCACCAACGCGTTACTAA 927 52.64 MANNDIEVGSRGSLPRKDYFEPLPAPMIDMEELAKWSFYRAIIAEFVATLLFLYVAVLTVIGNKTQTDPLNGGNLCGGVGTLGIAWVFGGMIFVLVYCTAGISGNSLIFIFPQFSKPGKLTGGHINPAVTFGMFLGRKISLIRALLYIIAQCLGALCGCALVKSLQRDRYNHYGGAANQLVDGYSKGTGLAVEIIGTFVLLYTVFSATDPKRNARDSYVPVLAPLPIGFTVFMVHLATIPITGTGINPARSFGAAVIINDKQIWKDHWIFWVGPLIGATIATMYYQYVLRASAVKAIGSFRSTPPTRY 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1792397 1793423 - CmoCh06G003710.1 Cmo06g00371 383933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00371 308 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 119 303 IPR034294 -
Cmo06g00371 308 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 105 IPR034294 -
Cmo06g00371 308 PANTHER AQUAPORIN PIP2-4-RELATED 119 303 - -
Cmo06g00371 308 PANTHER AQUAPORIN PIP2-4-RELATED 6 105 - -
Cmo06g00371 308 SUPERFAMILY Aquaporin-like 31 290 IPR023271 -
Cmo06g00371 308 TIGRFAM MIP: MIP family channel proteins 117 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 PRINTS Major intrinsic protein family signature 106 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 PRINTS Major intrinsic protein family signature 143 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 Gene3D Glycerol uptake facilitator protein. 25 306 IPR023271 -
Cmo06g00371 308 CDD MIP 40 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo06g00371 308 ProSitePatterns MIP family signature. 124 132 IPR022357 -
Cmo06g00371 308 Pfam Major intrinsic protein 33 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00371 Cmo-Chr6:1792397 Cmo07g00973 Cmo-Chr7:4770232 6.83E-154 dispersed
Cmo02g00893 Cmo-Chr2:5507658 Cmo06g00371 Cmo-Chr6:1792397 1.04E-145 wgd
Cmo03g01239 Cmo-Chr3:9556212 Cmo06g00371 Cmo-Chr6:1792397 4.19E-154 wgd
Cmo04g01442 Cmo-Chr4:7380649 Cmo06g00371 Cmo-Chr6:1792397 5.38E-145 wgd
Cmo06g00371 Cmo-Chr6:1792397 Cmo07g00971 Cmo-Chr7:4762813 1.53E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00371 K09872 - csv:101214142 509.99