Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00387 ATGTCACAAGATTCCGAGGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTGACCCGTTTATAACCAACAACCCATCAGCCCCAACAGCTAAACACACAGACCCTGAAGACCTGAGACCCAAAGAGGAGGTTCAAGACGGATTTGGCAGAGCCACAAACGGAGATATGGAGTCTACTAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCTGTCACCGCCGTTGGGTTTGGGGAGCTCTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCATGGTTGTTCTCTGCCTCTGTTTCTTCGATTCTTCGCCGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAATCCACAAAGATGAGGATCAAGTACTTAGAAGCAGCACTGGACCAGGACATCCAGTATTTTGATACCGAGGTGCGAACATCTGATGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACATTTGTTTCTGGATTCGTTGTGGGTTTCACTGCGGTGTGGCAATTGGCTTTAGTAACCCTTGCAGTGGTTCCTCTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCGAAGCTCACTGCCAAGACCCAGGAGGCTCTTTCAGAAGCTGGAAATATTGTCGAACAGACAATAGTTCAAATTCGAGTTGTCTTTGCTTTCGTCGGCGAATCAAGAGCATTACAGAGGTACTCCTCCGCATTGAAGATTTCTCAAAGAATAGGTTACAAGAGTGGGTTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTCGTCTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTTAGACACCATGCCACCAATGGCGGTCTCGCCATTGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCAAAGGCTAAAGTTGCGGCTGCTAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAACAATGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTAAAAAACGTAGATTTCTCATACCCATCAAGACCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCCGGAAAGACTATAGCTCTGGTCGGTAGCAGTGGCTCCGGCAAGAGTACCGTCGTCTCCCTCATTGAAAGATTCTATGACCCCATGTCAGGTGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTAAGATGGTTAAGACAGCAAATAGGGCTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAAAACATTCTCTTGGGCAGACCTGATGCCGACCAAGTTGAGGTCGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATAAAACTTCCTGAAGGCTATGACACTCAGGTAGGGGAAAGAGGACTGCAGCTGTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGAGCAATGCTGAAGAACCCTGCTATCCTACTCTTAGATGAGGCAACGAGTGCATTGGACTCAGAGTCAGAAAAGCTTGTACAGGAGGCTCTGGATCGTTTCATGATTGGGCGGACCACTCTTGTTATTGCCCATCGTCTCTCTACCATTCGGAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATAGGAACACATGATGAGCTCATTGCTAAAGGAGAGAATGGTGTATATGCTAAGCTCATCCGTATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCGGTGAGCTCCCCCATAATTGCACGGAATTCTTCCTATGGACGATCGCCATATTCGCGTCGGTTATCTGACTTCTCCACATCCGATTTTAGCCTCTCTCTGGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGGAGCAGGCCAGTTCCTTTTGGCGTCTTGTGAAAATGAATTCTCCTGAATGGCTCTATGCATTGCTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTCTTAAGCGCCTTCTTCGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTATAATCCAGACCATGCTTTCATGAGTAGAGAAATAATAAAGTACTGCTATCTACTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTTACAGCAGTACTGAAAAATGAAATGGCATGGTTTGACCAGGAAGAAAATGAGAGTGCCAAGATTGCTGCAAGGCTGGCCCTCGACGCGAACAACGTCAGATCAGCTATTGGAGATAGGATTTCTGTGATTGTACAGAACACTTCACTGATGCTAGTTGCATGCACTGCCGGATTTGTTTTGCAGTGGCGCCTCTCTCTTGTCCTTGTAGCCGTCTTCCCTGTGGTTGTTGCGGCCACTGTCTTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCCATTGCCAATGTAAGGACTGTCGCTGCATTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTTGAGATCCCACTACGACGCTGCTTTTGGAAGGGACAGATTGCCGGCAGTGGATTTGGCATTGCTCAGTTCTCTCTTTATGCTTCCTATGCTCTAGGTCTTTGGTATGCCTCATGGCTTGTGAAGCATGGCCTCTCCGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTTACTCTGGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCGGTCTTTGCACTTCTTGACCGCAAAACCGAAATTGAACCTGATGACCCAGATGCCACCCCAGTCCCAGATAAACTACGTGGAGAGGTTGAATTCAAACATGTTGACTTTTCCTATCCAACTCGGCCTGATATCCCTGTCTTCAGAGACCTAAGTTTGCGTGCCCGAGCAGGTAAGACGCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGTTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCATCATCAGGACGAGTTATGATTGATGGAAAGGACATTCGTAAGTTCAATCTCAAGTCCCTGAGAAAGCACATTGCTATGGTCCCACAGGAGCCATGCTTATTTGCTGCTTCCATACATGATAACATAGCTTATGGCCACGAATCAGCTACCGAGGCTGAGATCATAGAAGCTGCAACTTTGGCGAATGCTCATAAGTTCATTTCAGCATTGCCAGAAGGATATAAAACTTATGTTGGGGAGAGGGGAGTTCAACTATCTGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCTCTAATTAGGAAGGCAGAGCTAATACTACTAGATGAGGCAACAAGTGCACTCGATGCTGAATCCGAGCGATCCGTTCAGGAGGCCCTAAACAGGGCCTGTTCAGGAAAAACAACAATCGTAGTCGCTCATCGACTATCAACTATCCGAAATGCACACGTCATTGCAGTAATCGACGATGGTAAGGTTGCAGAGCAGGGATCACACTCACATTTGTTGAAAAATTATCCAGATGGGTGTTATGCCCGGATGATACAATTACAAAGATTCACACACAGCCAAGTGATTGGCATGACTTCAGGTTCAACTTCCTCAGCAAAAACTAGAGAGGATGATGAGAAAGAGAGCTAG 4101 47.28 MSQDSEEIKTTEQWKWSEMQGLELVSSDLPPPPPPPPPLDPFITNNPSAPTAKHTDPEDLRPKEEVQDGFGRATNGDMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLTAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPMSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGIAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIHDNIAYGHESATEAEIIEAATLANAHKFISALPEGYKTYVGERGVQLSGGQKQRIAIARALIRKAELILLDEATSALDAESERSVQEALNRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSAKTREDDEKES 1366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1880723 1886560 - CmoCh06G003870.1 Cmo06g00387 383949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00387 1366 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 776 1063 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo06g00387 1366 Gene3D - 1090 1345 IPR027417 -
Cmo06g00387 1366 MobiDBLite consensus disorder prediction 1 97 - -
Cmo06g00387 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 683 IPR027417 -
Cmo06g00387 1366 ProSitePatterns ABC transporters family signature. 1238 1252 IPR017871 GO:0005524
Cmo06g00387 1366 MobiDBLite consensus disorder prediction 54 70 - -
Cmo06g00387 1366 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 120 1342 - -
Cmo06g00387 1366 CDD ABC_6TM_Pgp_ABCB1_D1_like 120 407 - -
Cmo06g00387 1366 Gene3D ABC transporter type 1, transmembrane domain 167 1072 IPR036640 GO:0005524|GO:0016021
Cmo06g00387 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1090 1338 IPR027417 -
Cmo06g00387 1366 Pfam ABC transporter 462 611 IPR003439 GO:0005524
Cmo06g00387 1366 Pfam ABC transporter 1118 1266 IPR003439 GO:0005524
Cmo06g00387 1366 MobiDBLite consensus disorder prediction 27 44 - -
Cmo06g00387 1366 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 120 1342 IPR039421 -
Cmo06g00387 1366 CDD ABC_MTABC3_MDL1_MDL2 1099 1338 - -
Cmo06g00387 1366 Pfam ABC transporter transmembrane region 779 1046 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo06g00387 1366 Pfam ABC transporter transmembrane region 122 394 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo06g00387 1366 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 121 409 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo06g00387 1366 CDD ABC_MTABC3_MDL1_MDL2 444 683 - -
Cmo06g00387 1366 SUPERFAMILY ABC transporter transmembrane region 108 422 IPR036640 GO:0005524|GO:0016021
Cmo06g00387 1366 ProSitePatterns ABC transporters family signature. 583 597 IPR017871 GO:0005524
Cmo06g00387 1366 Gene3D - 442 707 IPR027417 -
Cmo06g00387 1366 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1099 1335 IPR003439 GO:0005524
Cmo06g00387 1366 SUPERFAMILY ABC transporter transmembrane region 763 1085 IPR036640 GO:0005524|GO:0016021
Cmo06g00387 1366 SMART AAA_5 1126 1318 IPR003593 -
Cmo06g00387 1366 SMART AAA_5 471 657 IPR003593 -
Cmo06g00387 1366 CDD ABC_6TM_Pgp_ABCB1_D2_like 766 1081 - -
Cmo06g00387 1366 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 680 IPR003439 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02890 Cmo-Chr4:20570027 Cmo06g00387 Cmo-Chr6:1880723 0 dispersed
Cmo06g00387 Cmo-Chr6:1880723 Cmo15g00292 Cmo-Chr15:1372725 2.19E-99 dispersed
Cmo14g00313 Cmo-Chr14:1437074 Cmo06g00387 Cmo-Chr6:1880723 1.08E-54 dispersed
Cmo20g01060 Cmo-Chr20:9777596 Cmo06g00387 Cmo-Chr6:1880723 1.79E-14 dispersed
Cmo06g00387 Cmo-Chr6:1880723 Cmo14g00215 Cmo-Chr14:979115 9.43E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00387 K05658 - csv:101220974 2416.73