Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00400 ATGGATAGAGAGTGGGGGTCCAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAGAATGAAGCTATCGATCGGAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAATAATGAGGGAAATTACTTGGCGCACACGCAGGGGAAGCGCCATCAGACTAATTTGGCGAAGAGAGCAGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGGAGGCCTGGTTATCGAGTAACGAAGCAATTTGATTCCGAGACAAAGCAGAGATCTCTGCTTTTCCAAATTGAATACCCAGAAATTGAAGACCTAGCAAAGCCAAGACACCGGTTTATGTCCTCTTATGAGCAGCGGGTGCAACCGTTCGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCCTATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCCACACCAAAATTCTTCTCTCACTGGGATCCAGACTCGAAAATGTTCACGTTGCAGTTGTATTTTAAATCCAAACCACTAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAATGGAACGGTGCCATTGCCGCCACCACCACAAGCTCCACCACCGCCCCCACCTCCACCACAGCAAGGGGCACCACCAAGAGTTCCTCCTCCTCCGATGCCTGGATCCTTGCCGCCTCCCCCTCCTGTAATGGCAAATGGTCCTCCTAGGCCAATGCCTCCTGGTGGAGCTCCGCCCATCCCTCCACCGCCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGACTTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGCCAGGGTGTCCGTCAGCCACCCCCTCCGCCACCCAATATGGGATAG 1005 52.04 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPLEANKPQTVPAANGTVPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQPPPPPPNMG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1940013 1942912 + CmoCh06G004000.1 Cmo06g00400 383962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00400 334 MobiDBLite consensus disorder prediction 307 334 - -
Cmo06g00400 334 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Cmo06g00400 334 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cmo06g00400 334 Pfam Zinc-finger of C2H2 type 52 76 - -
Cmo06g00400 334 MobiDBLite consensus disorder prediction 219 334 - -
Cmo06g00400 334 MobiDBLite consensus disorder prediction 227 295 - -
Cmo06g00400 334 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 328 - -
Cmo06g00400 334 MobiDBLite consensus disorder prediction 1 21 - -
Cmo06g00400 334 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Cmo06g00400 334 SMART CactinC_cactus_3 89 214 - -
Cmo06g00400 334 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Cmo06g00400 334 Gene3D Classic Zinc Finger 46 89 - -
Cmo06g00400 334 Gene3D - 93 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00400 Cmo14g00229 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00229 Cmo-Chr14:1050999 Cmo06g00400 Cmo-Chr6:1940013 8.04E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00400 K12826 - csv:101202831 434.876