Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00420 ATGCGGGCCCTCACTTCCTTGATCTTCGCTTTAGTATCCGTCGTTTTGTCGGCGACGGTGGTCTACTCCGGCTTCCCCGTCCAACGTCTCTCTCTGCAGAGAGCCTTCCCTTCATCTCGCTCTATCGAACTTGAAACTCTCAGAGCTCGGGACCGTCTCAGGCATGCCAGAATCTTGCAAGGTGTCGTCAGTGGCGTCGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCGTTGCTCGTCGGGCTTTACTTTACCAAAGTTAAATTGGGCACTCCCCCTAAGGAATTTACGGTGCAGATCGACACTGGAAGCGATATATTGTGGGTGAACTGCAATTCCTGCAATGGCTGCCCCAGAGCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCCAACTCATCAAGTTCTTCGCTGGTTTCCTGCTCTGATCCAATATGCAATTCTGCATTCCAAACAACTGCGACTCAGTGTTTATCTCAGACTAATCAATGTAGTTACACCTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTTATGGGGCATTCTATGATTGCTAACTCTTCAGCTACAGTTGTTTTTGGTTGCAGCACATATCAGTCAGGTGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTCGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTATCAGCTCGAGGGATAACCCCTAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGAGGTGGTATATTGGTTCTTGGAGAGGTTCTGGAGCCCGGCATTGTGTATAGCCCACTCGTCCCCTCTCAGCCTCACTATAACTTGTATCTGCAAAGCATTGCTGTCAATGGTCAGACGCTGCCAATCGATCCATCTGTGTTTGCAACATCAAATAATCGAGGAACTATTGTAGACTCCGGGACAACATTGGCTTATCTTGTGGAAGAAGCTTATACGCCATTTGTCAGCGCGATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAGCCAGTGTTATCTAGTATCCACCAGTGTAGACGAGATATTTCCCATGGTTAGCTTAAATTTTGCGGCAGGTGCATCTATGGTGTTAAGACCCGAAGAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACAATTTTAGGAGATAAGATATTCGTATACGATTTGGCACGCCAGCAAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCGGTCACGTCTGGGAAGAACGAGTTCGTCAATGCAGGACAGCTGAGCGTGAGCGGCTCAACCCAAGATAAGCTCCTTCAATCACTAGCTATAGAAGCATTAGCTCTTTTTCTGAGTTTCATTTTGTTCATCCACTTCCTGTTTCTGATAAGCTCCTTCAATCACTAG 1494 45.25 MRALTSLIFALVSVVLSATVVYSGFPVQRLSLQRAFPSSRSIELETLRARDRLRHARILQGVVSGVVDFSVEGSSDPLLVGLYFTKVKLGTPPKEFTVQIDTGSDILWVNCNSCNGCPRASGLGIQLNFFDASNSSSSSLVSCSDPICNSAFQTTATQCLSQTNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSATVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSNNRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGSQCYLVSTSVDEIFPMVSLNFAAGASMVLRPEEYLMHLGFYDGAALWCIGFQKVQEGVTILGDKIFVYDLARQQIGWANYDCSQAVNVSVTSGKNEFVNAGQLSVSGSTQDKLLQSLAIEALALFLSFILFIHFLFLISSFNH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2018132 2022571 + CmoCh06G004200.1 Cmo06g00420 383982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00420 497 Gene3D Acid Proteases 270 443 IPR021109 -
Cmo06g00420 497 CDD pepsin_A_like_plant 83 436 IPR034161 -
Cmo06g00420 497 Gene3D Acid Proteases 67 269 IPR021109 -
Cmo06g00420 497 ProSiteProfiles Peptidase family A1 domain profile. 83 432 IPR033121 -
Cmo06g00420 497 SUPERFAMILY Acid proteases 79 440 IPR021109 -
Cmo06g00420 497 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Cmo06g00420 497 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Cmo06g00420 497 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 455 - -
Cmo06g00420 497 Pfam Xylanase inhibitor C-terminal 286 432 IPR032799 -
Cmo06g00420 497 PANTHER ASPARTYL PROTEASES 5 455 IPR001461 GO:0004190|GO:0006508
Cmo06g00420 497 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00420 Cmo20g00568 CCT
Cmo06g00420 Cmo07g00916 CCT
Cmo06g00420 Cmo07g00916 ECH
Cmo06g00420 Cmo20g00568 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00420 Cmo-Chr6:2018132 Cmo10g00885 Cmo-Chr10:4302170 4.04E-104 dispersed
Cmo14g00244 Cmo-Chr14:1119458 Cmo06g00420 Cmo-Chr6:2018132 0 wgd
Cmo02g01402 Cmo-Chr2:8313305 Cmo06g00420 Cmo-Chr6:2018132 0 wgd
Cmo20g00568 Cmo-Chr20:2756324 Cmo06g00420 Cmo-Chr6:2018132 1.50E-179 wgd
Cmo06g00420 Cmo-Chr6:2018132 Cmo07g00916 Cmo-Chr7:4389137 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00420 - - cmos:111438716 909.827