Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00422 ATGGTAACTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCTCTGCTGCTATTCGCAGAAAACGTGCCCGAGCTGCGGCTCCATTGATGTTCCTTATCCTCTTAGTACCAATTCAAACTGTGGTGACTTAGACTATACTCTCCGCTGTGATTCTCATTCACAGAGACTCTACTTTGATGCACTCAATGGAAGTTCGTATCCAGTCCTGAAAATCAATGGTTCGAGTCAACGTTTGGTGATCCAACCATCTCCGTGGGTTCCTGACTCCTGTGTTACTCAAGACATGTTGGTCAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCCAATACAATTTTCCTTTTGAACTGTTCTCCTCGACTGCTCGTCTCACCACTCAATTGTACTCCATCTAGTATCTGTCATCACTACTTGGAACGTTCAGGACGTGTTGATGGAAAACGAGCATTTCAGTGTGCTAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGGATGCCCTCAGCGTATAAGATAAGACTTCATAACTCAGGCTGTAGAGCATTCAGGAGCATCCTTCATCTAGATGTAGAAAAGCCTGCAAATCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTGCCCCACCTGAACCAATCTGTAGAACTCAATCCGATTGCACTGGAGCGTCGGATTGTCGTCCTACTGGCAGTTCCAACAGCCGATCTCGTTGCCTTTGTAGAACGAGCTACCATTGGGATCATATCCTCGGAACATGCCTGAGAACAAATAGGAAGAGCATGGTTGGACTGAGTATAAAGCTCCTGGTATGTCTTGTTTCATTTTTCGTTCTAGCTGCGATTATCGCTCTAATTACTATCAGGAAGTCGAGAACATTCAGTAAGCAGGAAAAGCTGTGTAAAGAAAGAGAAGATATGTTGAATTTTAGAAATGGGGGCAGACCAGCCAGAATGTTTCATCTGAAAGAGATGAAGAAAGCAACGAATAAGTTTTCGAAAGATAGGGTCCTAGGATGCGGTGGCTTCGGAGAGGTTTACAAAGGTGAACTTCAAGACCGGACCGTTGTCGCCGTGAAGTCAGCTAAAGTGGGCAATCTAAAGAGTACCGAGCAGATACTCAACGAAGTCGGAATACTGTCTCAAGTAAACCACAAGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACAGAGCAACCATTAATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGTTTCCCACTTTCTTGGACTGGAGAAAAAGGCTAAAAGTTGCTTCACAAACTGCTGAAGCATTAGCTTACCTTCATTCAGCTGCATACCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATACTCTTGGATGATAACTTCAATGCCAAAGTTGCAGATTTTGGACTTTCAAGATTGGCTTTGCCAGGAATAAGCCATGTTTCGACTTGTGCTCAGGGTACATTAGGTTACCTAGACCCAGAATACTATCAGAATTACCAGTTAACAGATAAAAGTGATGTGTATAGTTTCGGAGTTGTCCTGCTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACGAGAGATGAAGATAGTGTCAATCTAGCAGTGTATGTGATCCAACGAGTGCACAACGGTGCGTTCATCGACACTGTCGATAAACAGCTTCTGAGTGACGATCCAACGAGCAATACACTGATTAGTGTGAAGCACTTGTTGGAGCTCGCACTCACGTGTTTGAGGGAGAAGAAATCGGAAAGGCCTTCCATGAAGGATGTAGTCCAAGAACTTGAGTACATAGCTCAGATATTGGAGAGTCCAGAAACAGTTGGTGAAGAAGAAGAAGAAGGGCAATCTTACAAAGGGTTAGAAGTTTAA 1944 43.36 MVTMKIPTPCLFGSYLFFLLFFSLCCYSQKTCPSCGSIDVPYPLSTNSNCGDLDYTLRCDSHSQRLYFDALNGSSYPVLKINGSSQRLVIQPSPWVPDSCVTQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSICHHYLERSGRVDGKRAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRAFRSILHLDVEKPANQWEEGLEIQWAAPPEPICRTQSDCTGASDCRPTGSSNSRSRCLCRTSYHWDHILGTCLRTNRKSMVGLSIKLLVCLVSFFVLAAIIALITIRKSRTFSKQEKLCKEREDMLNFRNGGRPARMFHLKEMKKATNKFSKDRVLGCGGFGEVYKGELQDRTVVAVKSAKVGNLKSTEQILNEVGILSQVNHKNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKFPTFLDWRKRLKVASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVADFGLSRLALPGISHVSTCAQGTLGYLDPEYYQNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDEDSVNLAVYVIQRVHNGAFIDTVDKQLLSDDPTSNTLISVKHLLELALTCLREKKSERPSMKDVVQELEYIAQILESPETVGEEEEEGQSYKGLEV 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2031132 2033075 - CmoCh06G004220.1 Cmo06g00422 383984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00422 647 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 23 632 - -
Cmo06g00422 647 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cmo06g00422 647 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cmo06g00422 647 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247
Cmo06g00422 647 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00422 647 Gene3D Transferase(Phosphotransferase) domain 1 422 640 - -
Cmo06g00422 647 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 632 IPR045274 GO:0007166
Cmo06g00422 647 Gene3D Phosphorylase Kinase; domain 1 317 421 - -
Cmo06g00422 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cmo06g00422 647 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00422 647 CDD STKc_IRAK 352 620 - -
Cmo06g00422 647 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01104 Cmo-Chr5:8797186 Cmo06g00422 Cmo-Chr6:2031132 2.22E-38 dispersed
Cmo06g00422 Cmo-Chr6:2031132 Cmo07g01055 Cmo-Chr7:5370828 0 dispersed
Cmo06g00422 Cmo-Chr6:2031132 Cmo15g00115 Cmo-Chr15:551544 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74404 PF07714 PK_Tyr_Ser-Thr 2.60E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00422 - - cmos:111450783 1281.16