Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00423 | ATGGAGCTCTTCCTTCTTCCATCATACAAGCAAAATCCCACCATTTTCTACAAACCCCTTACCCCTTTTCCCATTATCGGGAAGAGACGGCCATCTCTTTTCCCTTGTCGATGTTCATTATCGTCCTCTCATGGCGGACCTTCAGAACAAGCCAAAGAATCGCTGCGGTGTGAGGGAAGAAGGGCATTGATTGGTGGTTTCCTGTCGACGGCTGCGGGTTTATATTTCTGCAGTGTAGCCCATGCTGTTAGCACAAGTCGAAGGGCTCTAAGAGGGGCAAAAGTACCTGAAAGTGAGTTTACAACTCTCCCAAATGGTCTGAAGTACTATGATTTGAAGGTTGGAGGAGGAACTAAGGCCGTGATTGGATCGCGCGTTGCAGTTCACTATGTGGCTAAATGGAGAGGGATCACATTTATGACCAGTAGACAAGGGCTTGGTGTTGGTGGAGGAACGCCTTATGGATTTGATGTAGGCCAATCAGAAAGAGGATCAGTTCTCAAGGGATTGGATTTAGGTGTTCAAGGCATGAGGGTTGGAGGTCAGAGATTGCTTATAGTCCCTCCTGAGTTAGCTTATGGAAGCAAAGGCGTTCAGGAAATCCCTCCAAACGCAACAATCGAGTTGGATGTGGAATTGCTATCCATCAAACAAAGCCCATTTGGGACTCCAGTAAAAATAGTTGAAGGTTAA | 693 | 46.61 | MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPCRCSLSSSHGGPSEQAKESLRCEGRRALIGGFLSTAAGLYFCSVAHAVSTSRRALRGAKVPESEFTTLPNGLKYYDLKVGGGTKAVIGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGSVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGVQEIPPNATIELDVELLSIKQSPFGTPVKIVEG | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2033664 | 2037129 | - | CmoCh06G004230.1 | Cmo06g00423 | 383985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00423 | 230 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 118 | 214 | IPR001179 | GO:0003755 | |
| Cmo06g00423 | 230 | Gene3D | - | 80 | 221 | IPR046357 | GO:0003755 | |
| Cmo06g00423 | 230 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 123 | 217 | IPR001179 | GO:0003755 | |
| Cmo06g00423 | 230 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-4, CHLOROPLASTIC | 25 | 230 | - | - | |
| Cmo06g00423 | 230 | SUPERFAMILY | FKBP-like | 85 | 217 | - | - | |
| Cmo06g00423 | 230 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 25 | 230 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00423 | Cmo-Chr6:2033664 | Cmo18g01214 | Cmo-Chr18:12066475 | 2.33E-17 | dispersed | |
| Cmo18g00051 | Cmo-Chr18:333438 | Cmo06g00423 | Cmo-Chr6:2033664 | 1.76E-10 | dispersed | |
| Cmo06g00423 | Cmo-Chr6:2033664 | Cmo01g02086 | Cmo-Chr1:14502359 | 1.95E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00423 | - | - | csv:101205652 | 413.305 |