Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00426 ATGTCCATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACAAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCTGCAGCTGCGGCTCTCTTTATTCAGAGAGTATGGAGGCGCTACAGAGTGACTAAGATAGCTGCTTTGCAGCTTCAAGAAAGTTGGGAAGAGTTGGTGAATAATCGTTCTGGTGCTCTGGCTGGCACGTTCATTTCCTATAATATTTTGAGACCGTTTCTCTTCTTTATCTCATCTTTTCTGAAACGACCCCAAAATATCCAGACCAGAGATATAGACTGTATGAAGAATTGCTTTACAATCTTGTTTGAAAGCATCAATTCTACCGAATCAAAGAACAACTTTTGCTCCTTGGCCACTGGTACATCTGAAGAAAGAAGAATATGGACTTACCAATCAAGGAAACTTATTTCTGTATGCTTATTTATTCTTGTTCATTTCGACAAGTTGCAAGCAAAGGAGCAAAAAATTATTGTTACAACCTCTTTAGCCATGCGCTTGGTAGTCGTCTTCACTGATTATAATGGGTGGAAGAATGTAAATGAGAATAATCGTTTTGATACAGAAGCAGCATTGAAGGATTTAGTTCATTATCTAGGAACTTCTGAAAGTGGCCTTTACCTATCCGTCAGAAAATACATGTGTAAATTGAGTGTTATCCAATCTTCACGGACCACCAGTACCATCCAGACAAATGATTTATTTGTTATTACTGTGAGTGCAATAACTTTAGCTTTACGACCATTTCGTCTAATGAATTTTGATGCAATTGGCACTACTTCGTGGGAAGGGCATCATGTGGCTGAACAGTTCTGTCTGTTTCTACTTACAATTCCCGAACTTGTTCAAAATCTGCCTCAAGTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTATTGGGAATGTCTGACCTGGATCGGTTATCAGTTGATTGTGGCTCTAAGGTTGTTCCGGCAGTTGGATGGGCTCTTGCTAACATTATATGTCTGGCAGCAGGGACTGAAACTAAGGCCAGGGATTCTGGTTGGTTCAAGCAGAGTTTAGATTATGTGTTATATGTTCGTGTGGGTATCACTTTGGCAGAAAGACTTTTGGCTTTGATTGGGGATTTTGGGTGTGGTAGAAAGGAGAATCAAGATATCCAAAGCGAAAATTTAACTTCTTATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAATGGCATCCATGCCCTTAAGCACATTGCCCATTGATATGTTTAGGCCTATTTGTGAACAGAGGCATCTCACAGATCTTTTGACAATAGTAAATACAGATCTTCACTCCGAAAAAAGTACTGCACAGTCAAATAATATAGACTGTATGAAAAGCTTGAAACTGATCGATATATCATACTTTTACATGTACATGCTCAGAATATTTTCACTTTTGAATCCACCCGTTGGATCCTTACCTGTTCTTAACATGTTATCTTTTACTCCTGGGTTTCTTGTTGATTTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAGTGATGCTGATGAAGCTGAAGGTCCCTTTCCTGGCTCAAGTAAAATATCAAGTAAAAAGAAAGATGAAGTTTTTAGCAAAAAGCCAAAGCAAGTCAACAGGGATGGAAATAGTAAGAGGGTAACTGTCTTTCATAAGTTCACGAGCAAGTCACAACTGGGCAGTGATCATATGGACTCGGTTAAGGATCAATCTAGTTCAAGACAAGGGGATGATGACTTGCGTGATGTATGGGACATAAAATCTCTGAGTTGTGGTCCACAAGGAATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGACGACATAGAGTTCTATGAAAAACAGGTTCCGTTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAATACACTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAGAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCATCTGATGTATGAGAGAGATTGCAGACACCAGTTTTGTCCTCCTATGCTATGGCTTGCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATTAGCTAACTTACGGGCAGATGATAGTTTAACAGTTCCAACTGTAGGTTCGATTATAGCTACCACACCGCATGTGTTCCCATTCGAGGAAAGAGTTGAAATGTTCAGGGAGTTTGTCAAGATGGACAAAGTTTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGCAGCCATGTTATTGAAGATGGATTCAGACAGTTAAATTCCCTTGGGTCAAGGCTAAAATCAGCTATTCATGTTTCATTCGTTAGTGAATGTGGCCTTCCCGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTAACTGATATAGCCAAAGCAGCATTTTCTCCTGAATATGGGCTGTTCTGTCAAACGTCTACTGAAGACAGGCTTCTTATCCCTAATGCATCAGCAAGATATCTCGACAACGGCATCCAGATGATTGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGATTACTCATTTTCACATGTTTTTGTTCACAAGTTGTTAGGCCGGTATAGCTTCCTTGACGAGTTATCGACACTTGATCCAGAACTATACCGGAATCTCATGTATGTCAAGTCTTATGAGGGCGATGTCAAAGAACTCTCGCTGGATTTCACTGTTACTGAAGAATCATTTGGCAAGCGACATGTTATTGAGCTTATACATGGTGGCAAGGATGTTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATTGCTGATTATAAACTTAATCGACAGATACTGCCTTTTTCAAACGCATTCTATAGGGGTTTGACTGATCTTGTATCACCGTCGTGGTTGAAGTTATTTAGTGCAAGTGAATTCAATCAGTTGCTTTCCGGTGGAAACCACGACATTGACGTTGATGATTTGAGGAATAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACTATTAGTATTTTCTGGGAGGTTATTAAGGGGTTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACTAGTTGTTCTCGAGCTCCATTACTTGGATTCAAGTACCTGCAACCAGCTTTTACCATTCATAAGGTCTCATGTGACGTACCGATATGGGCTTCACTAGGAGGACAGGATGTCGAGCGCCTTCCGACAGCTTCCACTTGCTATAATACTCTCAAGCTCCCTACATATAAACGTTCGAGCACCTTGAGATCAAAACTTCTCTATGCGATCAATTCCAACTCCGGATTTGAACTTTCTTGA 3516 40.98 MSMDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAAALFIQRVWRRYRVTKIAALQLQESWEELVNNRSGALAGTFISYNILRPFLFFISSFLKRPQNIQTRDIDCMKNCFTILFESINSTESKNNFCSLATGTSEERRIWTYQSRKLISVCLFILVHFDKLQAKEQKIIVTTSLAMRLVVVFTDYNGWKNVNENNRFDTEAALKDLVHYLGTSESGLYLSVRKYMCKLSVIQSSRTTSTIQTNDLFVITVSAITLALRPFRLMNFDAIGTTSWEGHHVAEQFCLFLLTIPELVQNLPQVLVPAVKHRSILLPCFWTLLAKKETILLGMSDLDRLSVDCGSKVVPAVGWALANIICLAAGTETKARDSGWFKQSLDYVLYVRVGITLAERLLALIGDFGCGRKENQDIQSENLTSYEPSDAAVLKNEMASMPLSTLPIDMFRPICEQRHLTDLLTIVNTDLHSEKSTAQSNNIDCMKSLKLIDISYFYMYMLRIFSLLNPPVGSLPVLNMLSFTPGFLVDLWGVLESSLFPSDADEAEGPFPGSSKISSKKKDEVFSKKPKQVNRDGNSKRVTVFHKFTSKSQLGSDHMDSVKDQSSSRQGDDDLRDVWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLMYERDCRHQFCPPMLWLAPARTSRPPVAVAARTHEALLANLRADDSLTVPTVGSIIATTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVIEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFCQTSTEDRLLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHVFVHKLLGRYSFLDELSTLDPELYRNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELIHGGKDVSVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLVSPSWLKLFSASEFNQLLSGGNHDIDVDDLRNNTRYTGGYTEGSRTISIFWEVIKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASLGGQDVERLPTASTCYNTLKLPTYKRSSTLRSKLLYAINSNSGFELS 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2040599 2051006 - CmoCh06G004260.1 Cmo06g00426 383988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00426 1171 ProSiteProfiles HECT domain profile. 827 1171 IPR000569 GO:0004842
Cmo06g00426 1171 SMART hect_3 821 1171 IPR000569 GO:0004842
Cmo06g00426 1171 CDD HECTc 803 1169 IPR000569 GO:0004842
Cmo06g00426 1171 MobiDBLite consensus disorder prediction 557 578 - -
Cmo06g00426 1171 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1171 - -
Cmo06g00426 1171 Pfam HECT-domain (ubiquitin-transferase) 858 1171 IPR000569 GO:0004842
Cmo06g00426 1171 MobiDBLite consensus disorder prediction 546 578 - -
Cmo06g00426 1171 Gene3D Hect, E3 ligase catalytic domains 805 1043 - -
Cmo06g00426 1171 SUPERFAMILY Hect, E3 ligase catalytic domain 802 1164 IPR035983 GO:0004842
Cmo06g00426 1171 Gene3D Hect, E3 ligase catalytic domain 1046 1170 - -
Cmo06g00426 1171 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1171 IPR044611 GO:0000209|GO:0061630
Cmo06g00426 1171 Gene3D Hect, E3 ligase catalytic domain 929 1008 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00426 Cmo-Chr6:2040599 Cmo17g00376 Cmo-Chr17:2314870 5.13E-104 dispersed
Cmo06g00426 Cmo-Chr6:2040599 Cmo06g00681 Cmo-Chr6:3443640 2.50E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00426 K10588 - csv:101205886 2011.88