Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00436 ATGCATATTCAGTTCTGTGCTGGCTCTATGTGTTTCCACGACTCAGTGCTATTGATATGTCGTGCAGGTGCTGAGGTTAAAGCTGGAGAACCTCTCTTGGTGAGTCCCGGAGAGGAGAATATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTTCTGTATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACATTATCCTCAGAGAAATTCCCACAAGTTTCTTTTGATCTGGTGTTTGACAAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGCGAATCTTATACTGATTCTGAAGAGGATCTTCCACAAGCTGTCATTGACAATGGAAAACCAGAGCCACAGCCACAACCACAGCCTAAGAAAGATGAAAAGCCTGGTACTTCTGGAACGAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTATTGACACTAAGAAGAATGCAGACAGTTCTGATGAAGATGATGATGACAATGAAGACAGCTCGGATGACGAGAATGCAAATGGAGGTGAAGAAGACGACAGTGATGATGAAAATGAATTTTCTGGGGACGACAGTGATGATGACGATGAAAATGAAGACTTGGATGACAGTATGGAAGAGGATGAGCAGACACCAAAAAAGGCCGAAGCAAGCAAGAAGAGGCCTTTAGAGGCTGCTAATAAAACGCCTGCTCCTGATAAGAAGACAAAACTCGTCACTCCCCAGAAAACTGATGGCAAGAAAGGCGTTCCTCATGTAGCTACTCCTCATCCTTCAAAACAGGCTGGGAAAATGCCTGCTGCTAGTGACCAAAATAAACAGCAGACTCCCAAATCAGCTAGTGGTGCATTCCCCTGCAAATCTTGCAAGAGGGCATTTGGCTCAGAAACTGCGTTACAATCCCACACAAAGGCTAAGCACAGTGCTGAGAAGTGA 966 44.51 MHIQFCAGSMCFHDSVLLICRAGAEVKAGEPLLVSPGEENILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKDFELSHNWKNGSESYTDSEEDLPQAVIDNGKPEPQPQPQPKKDEKPGTSGTKKKVQIVEPNKGGSIDTKKNADSSDEDDDDNEDSSDDENANGGEEDDSDDENEFSGDDSDDDDENEDLDDSMEEDEQTPKKAEASKKRPLEAANKTPAPDKKTKLVTPQKTDGKKGVPHVATPHPSKQAGKMPAASDQNKQQTPKSASGAFPCKSCKRAFGSETALQSHTKAKHSAEK 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2091417 2095541 - CmoCh06G004360.1 Cmo06g00436 383998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00436 321 Coils Coil 316 321 - -
Cmo06g00436 321 Pfam Nucleoplasmin-like domain 23 99 IPR041232 -
Cmo06g00436 321 MobiDBLite consensus disorder prediction 275 292 - -
Cmo06g00436 321 MobiDBLite consensus disorder prediction 117 297 - -
Cmo06g00436 321 MobiDBLite consensus disorder prediction 168 216 - -
Cmo06g00436 321 PANTHER DEACETYLASE 2A, PUTATIVE-RELATED 23 315 - -
Cmo06g00436 321 Gene3D Classic Zinc Finger 292 320 - -
Cmo06g00436 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 321 IPR013087 -
Cmo06g00436 321 MobiDBLite consensus disorder prediction 217 241 - -
Cmo06g00436 321 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 23 315 - -
Cmo06g00436 321 ProSitePatterns Zinc finger C2H2 type domain signature. 296 317 IPR013087 -
Cmo06g00436 321 Gene3D Nucleoplasmin core domain 20 107 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00436 Cmo20g00250 CCT
Cmo02g01390 Cmo06g00436 CCT
Cmo06g00436 Cmo20g00250 ECH
Cmo02g01390 Cmo06g00436 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00436 Cmo-Chr6:2091417 Cmo20g00577 Cmo-Chr20:2839723 4.40E-27 dispersed
Cmo02g01389 Cmo-Chr2:8237086 Cmo06g00436 Cmo-Chr6:2091417 5.48E-25 wgd
Cmo20g00576 Cmo-Chr20:2837330 Cmo06g00436 Cmo-Chr6:2091417 2.71E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9927 PF17800 NPL 4.90E-09 CL0055 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00436 - - csv:101207572 398.667