Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00436 | ATGCATATTCAGTTCTGTGCTGGCTCTATGTGTTTCCACGACTCAGTGCTATTGATATGTCGTGCAGGTGCTGAGGTTAAAGCTGGAGAACCTCTCTTGGTGAGTCCCGGAGAGGAGAATATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTTCTGTATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACATTATCCTCAGAGAAATTCCCACAAGTTTCTTTTGATCTGGTGTTTGACAAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGCGAATCTTATACTGATTCTGAAGAGGATCTTCCACAAGCTGTCATTGACAATGGAAAACCAGAGCCACAGCCACAACCACAGCCTAAGAAAGATGAAAAGCCTGGTACTTCTGGAACGAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTATTGACACTAAGAAGAATGCAGACAGTTCTGATGAAGATGATGATGACAATGAAGACAGCTCGGATGACGAGAATGCAAATGGAGGTGAAGAAGACGACAGTGATGATGAAAATGAATTTTCTGGGGACGACAGTGATGATGACGATGAAAATGAAGACTTGGATGACAGTATGGAAGAGGATGAGCAGACACCAAAAAAGGCCGAAGCAAGCAAGAAGAGGCCTTTAGAGGCTGCTAATAAAACGCCTGCTCCTGATAAGAAGACAAAACTCGTCACTCCCCAGAAAACTGATGGCAAGAAAGGCGTTCCTCATGTAGCTACTCCTCATCCTTCAAAACAGGCTGGGAAAATGCCTGCTGCTAGTGACCAAAATAAACAGCAGACTCCCAAATCAGCTAGTGGTGCATTCCCCTGCAAATCTTGCAAGAGGGCATTTGGCTCAGAAACTGCGTTACAATCCCACACAAAGGCTAAGCACAGTGCTGAGAAGTGA | 966 | 44.51 | MHIQFCAGSMCFHDSVLLICRAGAEVKAGEPLLVSPGEENILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKDFELSHNWKNGSESYTDSEEDLPQAVIDNGKPEPQPQPQPKKDEKPGTSGTKKKVQIVEPNKGGSIDTKKNADSSDEDDDDNEDSSDDENANGGEEDDSDDENEFSGDDSDDDDENEDLDDSMEEDEQTPKKAEASKKRPLEAANKTPAPDKKTKLVTPQKTDGKKGVPHVATPHPSKQAGKMPAASDQNKQQTPKSASGAFPCKSCKRAFGSETALQSHTKAKHSAEK | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2091417 | 2095541 | - | CmoCh06G004360.1 | Cmo06g00436 | 383998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00436 | 321 | Coils | Coil | 316 | 321 | - | - | |
Cmo06g00436 | 321 | Pfam | Nucleoplasmin-like domain | 23 | 99 | IPR041232 | - | |
Cmo06g00436 | 321 | MobiDBLite | consensus disorder prediction | 275 | 292 | - | - | |
Cmo06g00436 | 321 | MobiDBLite | consensus disorder prediction | 117 | 297 | - | - | |
Cmo06g00436 | 321 | MobiDBLite | consensus disorder prediction | 168 | 216 | - | - | |
Cmo06g00436 | 321 | PANTHER | DEACETYLASE 2A, PUTATIVE-RELATED | 23 | 315 | - | - | |
Cmo06g00436 | 321 | Gene3D | Classic Zinc Finger | 292 | 320 | - | - | |
Cmo06g00436 | 321 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 294 | 321 | IPR013087 | - | |
Cmo06g00436 | 321 | MobiDBLite | consensus disorder prediction | 217 | 241 | - | - | |
Cmo06g00436 | 321 | PANTHER | 32 KDA HEAT SHOCK PROTEIN-RELATED | 23 | 315 | - | - | |
Cmo06g00436 | 321 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 296 | 317 | IPR013087 | - | |
Cmo06g00436 | 321 | Gene3D | Nucleoplasmin core domain | 20 | 107 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00436 | Cmo20g00250 | CCT | |
Cmo02g01390 | Cmo06g00436 | CCT | |
Cmo06g00436 | Cmo20g00250 | ECH | |
Cmo02g01390 | Cmo06g00436 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00436 | Cmo-Chr6:2091417 | Cmo20g00577 | Cmo-Chr20:2839723 | 4.40E-27 | dispersed | |
Cmo02g01389 | Cmo-Chr2:8237086 | Cmo06g00436 | Cmo-Chr6:2091417 | 5.48E-25 | wgd | |
Cmo20g00576 | Cmo-Chr20:2837330 | Cmo06g00436 | Cmo-Chr6:2091417 | 2.71E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9927 | PF17800 | NPL | 4.90E-09 | CL0055 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00436 | - | - | csv:101207572 | 398.667 |