Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00442 ATGGAAATGCCCGGTAGAAGGTTGAACTATACGCTTCTTAGTCAAATTCCAGATGACCAAAACAGTGGCGGTCCTGTCAGAGCTTCGACATCGTTGATCGAATTATCATCGGGAGAGGGGAAGAACGATAAGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGGTGATCACAGGGCGAGCCAGCAGCCGCAGGTGAATTGGATCGGCAATATGTACTCAGCCTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTATTATGCACTGACACCATCGACTACAGTGGCTAATGAGACGGATGATGTGCTTAGGATTGGAGGCGATTCAAGAGCTCAGGTAGCCGGAACTGGAGGATCCTCTGGTAAGAGCTGGGCGCAACATACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTCCGGCTTTCCTCAGATGCGACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATTAGCTCTGCTGAGGCCGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTTGACAAAATTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTTTGTGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACAGATTCTTCAATTGAAGTTGTTTTGATTGATCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAATCGGGTCCGAAGCATTTCTTGCAGCTCTATAACCACAAAAGAGGTTGTAGACCTGCTTGCAAAACTCGTCTGTAGGAGTTTGGGTGGCTCGGTTTCTGGAGAAGATGTGTTGGTGCCCAGCTGGAAGGAGTGCAGTAATAACTTGAAGGAGACCTTAGGCTCTGTGGTTGTTCCTCTTGGTGCACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGATACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCGTGCCATGATTCTTCTTCTTGTCTTGTGCAGTTTGGGTTTGACAAGGAGTATCTGGTCGACTTAATTGGTAATCCTGGTTGCTTATATGAGCCTGATTCCTTACTCAATGGTCCCTCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGGCAGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTGCAGATTGCCAGTTACTTAATGTTGTTTTTGATGAATGTTCCTCAGAAGTTACTGTGGATGGAGAAGATGGTGCACTTCCCTTGTATCCAGAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGTTCATGATGAAAAATCCATTTTACTGCACGGGAAAACTTCGCAGCCTAACTCCCAAGACGGAGACTTCCAACGATTTAAACTGCTACAACCAACTATCCTGGTTGAGGATCCAATCCCACTAAAGTACAGCCGTAGAAATGTGCAGTCACCTTTTGATCTGTCCCAGCCAATTATGGATTTTACTATGGACGTAAGGTTTGCGCAGGGAGGTCAGCTAATACCAAACACTCGGAGTAAAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGAGGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCTTTTGGAACTGTACATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTTACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTGCGACATCCCAACATTGTACTGTTTATGGGTGCCGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCGAGAGGTAGCTTGTATAGGTTTTTGCACAAGTCAGGTGTTAAAGACATAGATGAAACACGTCGGATAAATATGGCTTATGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTCGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGCTTAAAGGCACGCACATTTCTTTCATCAAAATCCGCGGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGTGATGAGCCCTCAAATGAAAAATCAGATGTTTACAGCTTTGGAGTGATTCTGTGGGAGTTGGCAACTTTGCAACAACCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGTGCAAAAGGCTTGAAATCCCACGTAATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATATTCTCTTAGAGATCTCTGGTGCATTTAAAATGATACTCCAAATGATCTCTGATTCTCTTAGCCAAATCTTCCATTTTGTCATTACTAGTAGTTCCCTTCTTCAAGCTAAGATCTTGTACTGTGCATCTCTCGGGTTTTTGCGAAGGGACGGAGAACTGCTGCGAAAATTCAACTGCCACATGAATCCCTTAGAAGAGGGCGATTCGGTTTCTCCAATTGGGGCGAATTCTTCTTCTGCTCAGTCGGATTCCGATGCTGCTGGAGTTTCTTCTGATCCTGAATTGATGATGAGCATTGGGTTTTCTTCGTCTCCGACTGGCGGAGGCTCTTGGGCTGAAAACCCAATGCCATCTTCTTCTGCACACAACCTGTTCGACGTTATGCCGAAACCAGATAAAGGAGCGTCGGATCCATTTTCCATGTGGGGTTCGGGTACTGATGTGCCTCAACCTCTAGAAGGCCTTCACGGTCAGCTAGTTCCGCCATTTCTGTGGAAGACCTTTGATCTTGTTGAGGATCCTGCGCTTGATCCGATTGTGTCTTGGGGTTCAGCAGGGCAGAGTTTTGTGGTTTGGGATCCTGTGGAGTTTTCTAGAGTGATTCTTCCATCTAATTTCAAGCACAACAACTTCTCCAGTTTTGTCAGACAGCTAAATACTTATGTGGGCTTGAAGAAATGCTCCCCTCCCTGTGTGAAGGGGACTGAGGACTTCCATCTCCAGCAGGTAGAATCAGGTCAAATTGTTCATGTAGCTATGCTTACATTTAATCCATTCTCTTACAGATTAGAGATTACAAAGGGAGGTAGAGCTTCCCCTATGCAAGAAAAACTTCTGACTCTCAATTTTGTTGGGTTCCGCAAGATTGATGCAGACAAGTGGGAATTTGCAAATGATGCCTTCCAACGAGGGAAGAGACACTTGTTGAAGAACATTCAGAGGCGAAAATCACCTCATTCTCAGCAGGTTGGAAGTTTGATAGGGCCATCTACTGGACCAGGGAAGTCTGGATTGGAAGATGAGATTGGGAGGTTAAAGAAAGAGAGGAGCATGTTAATGCAGGAGGTTGTTGAATTGCAGAAGGAGCAGAAGGGAACTGCTCAGCATGTGAAGACGGTGAATCGACGCCTCCAATCGGCCGAGCAGAAGCAGAAGCAGATGATTTCCTTTTTGGCAAAGTTGCTTCAAAATCCTGAGTTCTTATTCCGCTTGCAGAAGAAGAAGGAACAGAGAGATATTGATTCCCCAAGGATGAAACGGAAATTTGTTAAGCAGCATCAACACGAAACCGATGGTTTTACGCCGTTCATGGAAGGGCAGATTGTGAAATATCAACCGGATTGGGGAAGTCACGCCACATCGGAACTGAATCCAAGCCTGCTTGAAGGACCTGCTGCTTACCTTCTGCAGGGAGTGTCTGGAGATTTGGGATCAATTCCAGAAAGCATGTCCAATTTTCAATATGAGAATGATCCATCTAGGGATGTAATTACGTCTGAGGAATTAGCATTCCATCATGGAATTGTAAAACCAACAGAGCTGAGTGTAGAGCCTTCAAACATGTCAATGGAGGATCAACATTCCAAGGGAAAGGCTATTGGGAGTTCCTCACAAGATGTCAATCCTGACTACTTTGTCTCTTTGGCAGAAAGTATTCAACAGTTCTCACATCTTGGAACTGGAAATGTCATTAAACCAGAAGAAATTTGGAGCACGGGTTTGAATGTCGATACTGGCACGTCCAGTTCAAACACCGAGTTGTGGAGCAATCCAGTTGATTTCGAGGATCCATTTTTGCAAGGCTCTAGCGGATTGTCACCATTCTGGGACTTAGGTTCACTGCAGGCTGGAGATTCCCACACGAATACATGGTCAGCTTCTGGATTCCCATTTGATGATCCAGATAGTCGAGCTTGTCCCGAAAATACAGACAACTCTGAGGATAAATAA 4377 45.08 MEMPGRRLNYTLLSQIPDDQNSGGPVRASTSLIELSSGEGKNDKRKLERGLDWEAGGDHRASQQPQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYALTPSTTVANETDDVLRIGGDSRAQVAGTGGSSGKSWAQHTEESYQLQLALALRLSSDATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYFDKIPDGFYLIHGMDPYVWTLCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDQRTDPNLKDLQNRVRSISCSSITTKEVVDLLAKLVCRSLGGSVSGEDVLVPSWKECSNNLKETLGSVVVPLGALSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGFDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEAAIDFRSLAKQYFADCQLLNVVFDECSSEVTVDGEDGALPLYPEQFDRKFTNRSNQMLVTGVHDEKSILLHGKTSQPNSQDGDFQRFKLLQPTILVEDPIPLKYSRRNVQSPFDLSQPIMDFTMDVRFAQGGQLIPNTRSKTLPLGAEDLDIPWEDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRFLHKSGVKDIDETRRINMAYDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKCKRLEIPRNVNPKLASLIVACWADILLEISGAFKMILQMISDSLSQIFHFVITSSSLLQAKILYCASLGFLRRDGELLRKFNCHMNPLEEGDSVSPIGANSSSAQSDSDAAGVSSDPELMMSIGFSSSPTGGGSWAENPMPSSSAHNLFDVMPKPDKGASDPFSMWGSGTDVPQPLEGLHGQLVPPFLWKTFDLVEDPALDPIVSWGSAGQSFVVWDPVEFSRVILPSNFKHNNFSSFVRQLNTYVGLKKCSPPCVKGTEDFHLQQVESGQIVHVAMLTFNPFSYRLEITKGGRASPMQEKLLTLNFVGFRKIDADKWEFANDAFQRGKRHLLKNIQRRKSPHSQQVGSLIGPSTGPGKSGLEDEIGRLKKERSMLMQEVVELQKEQKGTAQHVKTVNRRLQSAEQKQKQMISFLAKLLQNPEFLFRLQKKKEQRDIDSPRMKRKFVKQHQHETDGFTPFMEGQIVKYQPDWGSHATSELNPSLLEGPAAYLLQGVSGDLGSIPESMSNFQYENDPSRDVITSEELAFHHGIVKPTELSVEPSNMSMEDQHSKGKAIGSSSQDVNPDYFVSLAESIQQFSHLGTGNVIKPEEIWSTGLNVDTGTSSSNTELWSNPVDFEDPFLQGSSGLSPFWDLGSLQAGDSHTNTWSASGFPFDDPDSRACPENTDNSEDK 1458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2118798 2130108 + CmoCh06G004420.1 Cmo06g00442 384004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00442 1458 Pfam Protein tyrosine and serine/threonine kinase 572 808 IPR001245 GO:0004672|GO:0006468
Cmo06g00442 1458 MobiDBLite consensus disorder prediction 877 899 - -
Cmo06g00442 1458 Pfam Ethylene-responsive protein kinase Le-CTR1 182 386 - -
Cmo06g00442 1458 ProSitePatterns Protein kinases ATP-binding region signature. 577 598 IPR017441 GO:0005524
Cmo06g00442 1458 SMART hsfneu3 968 1124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo06g00442 1458 MobiDBLite consensus disorder prediction 1123 1148 - -
Cmo06g00442 1458 CDD STKc_MAP3K-like 577 808 - -
Cmo06g00442 1458 MobiDBLite consensus disorder prediction 1124 1138 - -
Cmo06g00442 1458 PRINTS Heat shock factor (HSF) domain signature 972 995 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo06g00442 1458 PRINTS Heat shock factor (HSF) domain signature 1023 1035 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo06g00442 1458 PRINTS Heat shock factor (HSF) domain signature 1010 1022 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo06g00442 1458 Gene3D Transferase(Phosphotransferase) domain 1 650 820 - -
Cmo06g00442 1458 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 123 826 - -
Cmo06g00442 1458 MobiDBLite consensus disorder prediction 880 897 - -
Cmo06g00442 1458 ProSiteProfiles Protein kinase domain profile. 571 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00442 1458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Cmo06g00442 1458 Gene3D - 965 1125 IPR036388 -
Cmo06g00442 1458 SMART serkin_6 571 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00442 1458 Pfam HSF-type DNA-binding 972 1124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo06g00442 1458 Gene3D Phosphorylase Kinase; domain 1 564 649 - -
Cmo06g00442 1458 SUPERFAMILY Winged helix DNA-binding domain 970 1031 IPR036390 -
Cmo06g00442 1458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 123 826 - -
Cmo06g00442 1458 SUPERFAMILY Protein kinase-like (PK-like) 555 808 IPR011009 -
Cmo06g00442 1458 MobiDBLite consensus disorder prediction 1431 1458 - -
Cmo06g00442 1458 Coils Coil 1144 1171 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00442 Cmo14g00267 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01529 Cmo-Chr1:11809003 Cmo06g00442 Cmo-Chr6:2118798 0 dispersed
Cmo06g00442 Cmo-Chr6:2118798 Cmo09g00582 Cmo-Chr9:2850373 0 dispersed
Cmo14g00267 Cmo-Chr14:1203588 Cmo06g00442 Cmo-Chr6:2118798 0 transposed
Cmo14g00266 Cmo-Chr14:1195739 Cmo06g00442 Cmo-Chr6:2118798 1.82E-139 wgd
Cmo03g01170 Cmo-Chr3:9188594 Cmo06g00442 Cmo-Chr6:2118798 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9928 PF07714 PK_Tyr_Ser-Thr 4.40E-65 CL0016 Cmo TF
74406 PF07714 PK_Tyr_Ser-Thr 4.40E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00442 K14510 - csv:101208452 1421.37