Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00446 | ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCAGCGACTGGCCGATGAGGCTGAGCGCGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAATTGGTTCGGGGACCAATATTGTGCAACCCAGATTTCGAGCAAGTGATAGAGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAACCACTGCAGCATCAGGAGCTTGTCAGCCAATACAGAACAGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACCAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCCATCTCTGCCACCGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTGAAGAATATTGGAAGAGACTACATAAAATACTTTGCAGCAAAGCTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACTCTCCTGTACATACAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACACTGCAGGTTATCGAGAAAGAACTTGGCTTCATAACCAACAGTGGTTCTTCTTCTGGGACCATATCCTCAAAGCCAGAATTGCATTCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGACAACGGCTTCAACAGTCGGGCAGGGTGAAAGGAATGACTAGTGACGCTACTATTGCAACTACAAATGTAACTCAGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGCAGATGCTTCAATTAAAGTGCATGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATAGCACAAGAGAAGAACATCACGGCTGCATATGCAGATTATGAATATGGTTCCGATCTTTCAAGGACTCCAGGTATCGGAAGAAGGGCTGTTGATGAAGGGCGAGACAAACCCTGGTCTACAACTGGTAGCAATTTGGCAGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTATCCTGCACCCAGGTCTGCAAACACTGGTGCACGTCTACTGCCCACACAAAATTTTTCAAGCAGCAGCAGCAACCGAGGATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTGCCAGTAGCATTGGGAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCTATTAAGTTTACGAGATACTGGGGGAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCATTATCTCTGGATGGGCTGAGAGGCGGGATTCCTAAAAAGAATTCAGCTCAGTCAGGAGGATATGGTGCCACTCTTACTGCCCTGTCAGGTGGTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAAATTACATCGTCGAATATTGGAGCTTCAGGACATGAATTTCTGAACAAGGGAGGTTCAGGGTCCATTGGGACTGTAGGCCAGCAAATATTTCCATCACGAAATGTTGCATTCGCATCTGGACAGCCACCCTTGCATCAACGTCCCCCTTCACCATTGTCAGTGGATCATATTCCTCATCAAATGCCCAACCATAAAACTTCTTCATTTTCTAATCTTGACCCACGTAAAAGGCATTTACAGGATGCTTCCCTTGGTCGGCATCCCAACGTTCAGTCAGATAACCTTAAAAAACCACAGCCTCAGGACCGTCAAGCTGCAGCCTCCCCCATACCTACTTCTCAACCCAGGCAGCCGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTAGGCAGTCCGAACTTTCAAGACAGCATGCAGTATCTATTCCAGGCACTGATTTTGGACCTCCTTCATCAGCTGGGACAGTTCCAGTTCGTTTACCTGCAGAAATTTTGGGAGAGACAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTTTCCAACCATTCAATAGCCAGTAGCATGCAGCAGAATATCAGCTTCCAAGATGCAGGAAATATGCAACCCCATTCAAACGTCAAACCTCAACTACCAAGCCAGTCTTCTCCTGCCCATACTCAGACGACATTCTCAGAGCCAAAGACTGCGGGAGAATCTTCATTAGGTCCTCTTGAAAGCCCGTCAGCTCTGGTTAAGCTATCTCAAACTAAGGTAGAAGATACTCCGTTGCCATCTGATCCACCTTCACCCTCATCTCCTATGAATAGTGCATCCACGGAAACTTCAAATGTGGTAAACGACTCTTCTACCCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCTGCTTCAAAAGGAGAGTTAACAAATAGTGCGACTTCCCAAATGACTGCGCAGCCTGAAAATTTGAAGTTAGGTGATGCTGTGACATGTTCTGTACCAGTTCCTTCCATCCCCGTTACTTCTTCCAGTCAATCATCTACGATACTTGAATCATCTTCAAAAGCTGCTGCTAAGAGCTCCACTAGTCCACCTCCATATGCCACAACTGAGATAACCAACCTCATAGGCTTTGAATTTAGTTCACATGTTATTCGAAAATTTCAGCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAAACAATTCAAATAGGGCACCAAGAAGATGGTATCCAAGTTCAGATGATTGGATTTCTGGAAATGATATACTCTTACATGATGCTGCCACTTCTCCGGACAGGTGTGACATGATGGAAGAAGTTAATGAGCCAATGGTACCTGCAGATGAAGATCATTTGGTCTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCATGACTTGGATAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGCGGTTAGTGAGAGAGGAAGCACAATTGAACAAGTTGCTAGAGGACCCATCGTTCACACAAAATGTATAACTGAAAGTTCACTACATGACTTGGGACTGGCAACTGATATTAAGATGAATCAAGTGTTTTGTTCCCCGTTTGAGATCGCACTTGCCATTCAATCAATGGAACACCTGAATCATAATCGTTTTCTTCTTTTAGTTCTCCATTGA | 3339 | 44.83 | MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSPVHTSMRHLFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELHSQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDIAQEKNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKLSGQRNGFNIKLGYENYPAPRSANTGARLLPTQNFSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHGASAIASSIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPLSLDGLRGGIPKKNSAQSGGYGATLTALSGGNSSVDQMGGRPQITSSNIGASGHEFLNKGGSGSIGTVGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLDPRKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASPIPTSQPRQPFSLSESLKPDVRQSELSRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQQNISFQDAGNMQPHSNVKPQLPSQSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQTKVEDTPLPSDPPSPSSPMNSASTETSNVVNDSSTPISNLLSSLVAKGLISASKGELTNSATSQMTAQPENLKLGDAVTCSVPVPSIPVTSSSQSSTILESSSKAAAKSSTSPPPYATTEITNLIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANNSNRAPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELFEDFYSHDLDKWMFKGAMYITIPSAVSERGSTIEQVARGPIVHTKCITESSLHDLGLATDIKMNQVFCSPFEIALAIQSMEHLNHNRFLLLVLH | 1112 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2134450 | 2141630 | + | CmoCh06G004460.1 | Cmo06g00446 | 384008 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 321 | 341 | - | - | |
Cmo06g00446 | 1112 | Gene3D | - | 72 | 202 | IPR008942 | - | |
Cmo06g00446 | 1112 | SUPERFAMILY | ENTH/VHS domain | 78 | 207 | IPR008942 | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 371 | 393 | - | - | |
Cmo06g00446 | 1112 | PANTHER | RNA POLYMERASE II-BINDING DOMAIN PROTEIN | 3 | 1072 | - | - | |
Cmo06g00446 | 1112 | CDD | CID_Pcf11 | 82 | 194 | - | - | |
Cmo06g00446 | 1112 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 931 | 951 | IPR013087 | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 453 | 477 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 208 | 222 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 563 | 681 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 611 | 665 | - | - | |
Cmo06g00446 | 1112 | ProSiteProfiles | CID domain profile. | 77 | 205 | IPR006569 | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 726 | 759 | - | - | |
Cmo06g00446 | 1112 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 929 | 956 | IPR013087 | - | |
Cmo06g00446 | 1112 | SMART | 558neu5 | 80 | 202 | IPR006569 | - | |
Cmo06g00446 | 1112 | Pfam | CID domain | 87 | 195 | IPR006569 | - | |
Cmo06g00446 | 1112 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 3 | 1072 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 726 | 812 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 368 | 393 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 444 | 477 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 208 | 229 | - | - | |
Cmo06g00446 | 1112 | Coils | Coil | 1110 | 1112 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 795 | 812 | - | - | |
Cmo06g00446 | 1112 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00446 | Cmo14g00269 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00446 | Cmo-Chr6:2134450 | Cmo13g00752 | Cmo-Chr13:7345150 | 2.89E-32 | dispersed | |
Cmo14g00269 | Cmo-Chr14:1213865 | Cmo06g00446 | Cmo-Chr6:2134450 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00446 | K14400 | - | csv:101223169 | 1652.49 |