Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00446 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCAGCGACTGGCCGATGAGGCTGAGCGCGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAATTGGTTCGGGGACCAATATTGTGCAACCCAGATTTCGAGCAAGTGATAGAGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAACCACTGCAGCATCAGGAGCTTGTCAGCCAATACAGAACAGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACCAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCCATCTCTGCCACCGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTGAAGAATATTGGAAGAGACTACATAAAATACTTTGCAGCAAAGCTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACTCTCCTGTACATACAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACACTGCAGGTTATCGAGAAAGAACTTGGCTTCATAACCAACAGTGGTTCTTCTTCTGGGACCATATCCTCAAAGCCAGAATTGCATTCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGACAACGGCTTCAACAGTCGGGCAGGGTGAAAGGAATGACTAGTGACGCTACTATTGCAACTACAAATGTAACTCAGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGCAGATGCTTCAATTAAAGTGCATGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATAGCACAAGAGAAGAACATCACGGCTGCATATGCAGATTATGAATATGGTTCCGATCTTTCAAGGACTCCAGGTATCGGAAGAAGGGCTGTTGATGAAGGGCGAGACAAACCCTGGTCTACAACTGGTAGCAATTTGGCAGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTATCCTGCACCCAGGTCTGCAAACACTGGTGCACGTCTACTGCCCACACAAAATTTTTCAAGCAGCAGCAGCAACCGAGGATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTGCCAGTAGCATTGGGAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCTATTAAGTTTACGAGATACTGGGGGAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCATTATCTCTGGATGGGCTGAGAGGCGGGATTCCTAAAAAGAATTCAGCTCAGTCAGGAGGATATGGTGCCACTCTTACTGCCCTGTCAGGTGGTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAAATTACATCGTCGAATATTGGAGCTTCAGGACATGAATTTCTGAACAAGGGAGGTTCAGGGTCCATTGGGACTGTAGGCCAGCAAATATTTCCATCACGAAATGTTGCATTCGCATCTGGACAGCCACCCTTGCATCAACGTCCCCCTTCACCATTGTCAGTGGATCATATTCCTCATCAAATGCCCAACCATAAAACTTCTTCATTTTCTAATCTTGACCCACGTAAAAGGCATTTACAGGATGCTTCCCTTGGTCGGCATCCCAACGTTCAGTCAGATAACCTTAAAAAACCACAGCCTCAGGACCGTCAAGCTGCAGCCTCCCCCATACCTACTTCTCAACCCAGGCAGCCGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTAGGCAGTCCGAACTTTCAAGACAGCATGCAGTATCTATTCCAGGCACTGATTTTGGACCTCCTTCATCAGCTGGGACAGTTCCAGTTCGTTTACCTGCAGAAATTTTGGGAGAGACAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTTTCCAACCATTCAATAGCCAGTAGCATGCAGCAGAATATCAGCTTCCAAGATGCAGGAAATATGCAACCCCATTCAAACGTCAAACCTCAACTACCAAGCCAGTCTTCTCCTGCCCATACTCAGACGACATTCTCAGAGCCAAAGACTGCGGGAGAATCTTCATTAGGTCCTCTTGAAAGCCCGTCAGCTCTGGTTAAGCTATCTCAAACTAAGGTAGAAGATACTCCGTTGCCATCTGATCCACCTTCACCCTCATCTCCTATGAATAGTGCATCCACGGAAACTTCAAATGTGGTAAACGACTCTTCTACCCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCTGCTTCAAAAGGAGAGTTAACAAATAGTGCGACTTCCCAAATGACTGCGCAGCCTGAAAATTTGAAGTTAGGTGATGCTGTGACATGTTCTGTACCAGTTCCTTCCATCCCCGTTACTTCTTCCAGTCAATCATCTACGATACTTGAATCATCTTCAAAAGCTGCTGCTAAGAGCTCCACTAGTCCACCTCCATATGCCACAACTGAGATAACCAACCTCATAGGCTTTGAATTTAGTTCACATGTTATTCGAAAATTTCAGCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAAACAATTCAAATAGGGCACCAAGAAGATGGTATCCAAGTTCAGATGATTGGATTTCTGGAAATGATATACTCTTACATGATGCTGCCACTTCTCCGGACAGGTGTGACATGATGGAAGAAGTTAATGAGCCAATGGTACCTGCAGATGAAGATCATTTGGTCTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCATGACTTGGATAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGCGGTTAGTGAGAGAGGAAGCACAATTGAACAAGTTGCTAGAGGACCCATCGTTCACACAAAATGTATAACTGAAAGTTCACTACATGACTTGGGACTGGCAACTGATATTAAGATGAATCAAGTGTTTTGTTCCCCGTTTGAGATCGCACTTGCCATTCAATCAATGGAACACCTGAATCATAATCGTTTTCTTCTTTTAGTTCTCCATTGA 3339 44.83 MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSPVHTSMRHLFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELHSQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDIAQEKNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKLSGQRNGFNIKLGYENYPAPRSANTGARLLPTQNFSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHGASAIASSIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPLSLDGLRGGIPKKNSAQSGGYGATLTALSGGNSSVDQMGGRPQITSSNIGASGHEFLNKGGSGSIGTVGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLDPRKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASPIPTSQPRQPFSLSESLKPDVRQSELSRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQQNISFQDAGNMQPHSNVKPQLPSQSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQTKVEDTPLPSDPPSPSSPMNSASTETSNVVNDSSTPISNLLSSLVAKGLISASKGELTNSATSQMTAQPENLKLGDAVTCSVPVPSIPVTSSSQSSTILESSSKAAAKSSTSPPPYATTEITNLIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANNSNRAPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELFEDFYSHDLDKWMFKGAMYITIPSAVSERGSTIEQVARGPIVHTKCITESSLHDLGLATDIKMNQVFCSPFEIALAIQSMEHLNHNRFLLLVLH 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2134450 2141630 + CmoCh06G004460.1 Cmo06g00446 384008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 321 341 - -
Cmo06g00446 1112 Gene3D - 72 202 IPR008942 -
Cmo06g00446 1112 SUPERFAMILY ENTH/VHS domain 78 207 IPR008942 -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 371 393 - -
Cmo06g00446 1112 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1072 - -
Cmo06g00446 1112 CDD CID_Pcf11 82 194 - -
Cmo06g00446 1112 ProSitePatterns Zinc finger C2H2 type domain signature. 931 951 IPR013087 -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 453 477 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 208 222 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 563 681 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 611 665 - -
Cmo06g00446 1112 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 726 759 - -
Cmo06g00446 1112 ProSiteProfiles Zinc finger C2H2 type domain profile. 929 956 IPR013087 -
Cmo06g00446 1112 SMART 558neu5 80 202 IPR006569 -
Cmo06g00446 1112 Pfam CID domain 87 195 IPR006569 -
Cmo06g00446 1112 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1072 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 1 75 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 726 812 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 368 393 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 444 477 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 208 229 - -
Cmo06g00446 1112 Coils Coil 1110 1112 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 795 812 - -
Cmo06g00446 1112 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00446 Cmo14g00269 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00446 Cmo-Chr6:2134450 Cmo13g00752 Cmo-Chr13:7345150 2.89E-32 dispersed
Cmo14g00269 Cmo-Chr14:1213865 Cmo06g00446 Cmo-Chr6:2134450 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00446 K14400 - csv:101223169 1652.49