Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00452 ATGGATGATCAATATTCCCTTTCCGATCTCCGCCACCTCATCACTGCCCCGCCTCGCTCTCATTTCCCTTCTTCCTCAATTCCCCACCACGATCTTGCTTCTACCGCCTTTCGCCACCACCATACCCCCTATGATCTCATTCGCTCTCAACCCACCACCGTCCTTGGTTCCGCTTCCCCTACTAGCTTCGATGCTCAAACCACCACCGCTCGGTGGCCTCGCCAAGAGACTCTCACTCTCTTGGATGTCAGATCCCGCCTCGATTCTAAGTTTAAAGAAGCTAACCAAAAAGGACCCCTTTGGGATGAAGTTTCTAGAATTATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAGAAATGCAGAGAGAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGATGGCAAAGCTGGAAGACAAGATGGCAAAAACTACAGATTCTTCAGGCAGCTTGAAGCTCTCTATGGTGAAACCAGCAATGCCACTTCACTTCCAGACTCCCATTTTGTTGGAGATGGCAACCTTATATTCCAACAAGATGGGACTAGTAATCCAACCTCCGGTCACATGAGCTATGATGCTCAGCTGAAGCACTACTGCGACAGTCTCAGCCTCTCGAACACGTCCGAGTTTGAAACCTCTGTGTCGTCCGATGGTAATGACGAGTTTGGTTCGGTCAATGATTCGGTGGAGAAGAGGAAGAGGCGAGCTGGGAAATGCTGGAAGGTGAAGATCAAGCAGTTCATTGGCTTGCAAATGAGGAAGCTAATTGATAAGCAAGAGGCTGGGTTGGAGAAGCTCATGAAGACTCTTGAACAAAAGGAGAAGGCAAGAATGGTATGGGAAGAGGAATGGAGGAAACAAGAAGTGTCAAGAATTGAGAGAGAAAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAAGCTAGAGATGCAGCGTTAATGGAGGCATTACAAAAGCTAACAGGCAAAGAGTTAATCACCGCCGAGCCTCATCAAAATGAAGATGGTAGTGAGATACTCAACAATTACCAAACAAAAACAATGGATCAAACCAACAAGAAACGCAAGGACAATTCAAGATCACCCACCACAACCTACAATCTTTACTTCCAAACTGATTCCTCCGTCTACGGCGGCGGTGGTCGTGGCGCCGAGATGAAAGAACAAAGTCCGAACAGCTCGAACGCCGGGGGCAGTGGCGGTGGCAGCCAAGTGGTGCAAGATAGCTGCTTTTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGCTCCCAACAGCTTTCTTTAG 1299 46.96 MDDQYSLSDLRHLITAPPRSHFPSSSIPHHDLASTAFRHHHTPYDLIRSQPTTVLGSASPTSFDAQTTTARWPRQETLTLLDVRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKDGKAGRQDGKNYRFFRQLEALYGETSNATSLPDSHFVGDGNLIFQQDGTSNPTSGHMSYDAQLKHYCDSLSLSNTSEFETSVSSDGNDEFGSVNDSVEKRKRRAGKCWKVKIKQFIGLQMRKLIDKQEAGLEKLMKTLEQKEKARMVWEEEWRKQEVSRIERERSFWAKERAWIEARDAALMEALQKLTGKELITAEPHQNEDGSEILNNYQTKTMDQTNKKRKDNSRSPTTTYNLYFQTDSSVYGGGGRGAEMKEQSPNSSNAGGSGGGSQVVQDSCFFLMGEGDQSQSAPNSFL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2157372 2161559 - CmoCh06G004520.1 Cmo06g00452 384014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00452 432 ProSiteProfiles Myb-like domain profile. 64 129 IPR001005 -
Cmo06g00452 432 MobiDBLite consensus disorder prediction 381 407 - -
Cmo06g00452 432 MobiDBLite consensus disorder prediction 418 432 - -
Cmo06g00452 432 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 342 426 - -
Cmo06g00452 432 Gene3D - 72 134 - -
Cmo06g00452 432 PANTHER - 60 337 - -
Cmo06g00452 432 MobiDBLite consensus disorder prediction 413 432 - -
Cmo06g00452 432 PANTHER - 342 426 - -
Cmo06g00452 432 CDD GT1 71 136 - -
Cmo06g00452 432 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 60 337 - -
Cmo06g00452 432 MobiDBLite consensus disorder prediction 391 407 - -
Cmo06g00452 432 Coils Coil 260 287 - -
Cmo06g00452 432 MobiDBLite consensus disorder prediction 348 369 - -
Cmo06g00452 432 Pfam Myb/SANT-like DNA-binding domain 71 157 IPR044822 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00452 Cmo14g00274 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00452 Cmo-Chr6:2157372 Cmo18g00936 Cmo-Chr18:10531114 4.34E-74 dispersed
Cmo14g00274 Cmo-Chr14:1239386 Cmo06g00452 Cmo-Chr6:2157372 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9929 PF13837 Myb_DNA-bind_4 3.30E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00452 - - cmax:111498734 807.364