Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00454 ATGGCTACTTCCGGCCGCCACCCCATTTACCGAGGCGTACGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGGGAGCCCCGGAAGCCAAATCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACTCACCTCAATTTCCCCAATTCTGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCAGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGGAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGGGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGCGATGACGACGGAGCCGATCATGGTACCGGAAACCTTTGGAATTTTTCCTAA 513 54.39 MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNFS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2168177 2168689 + CmoCh06G004540.1 Cmo06g00454 384016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00454 170 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Cmo06g00454 170 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Cmo06g00454 170 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Cmo06g00454 170 CDD AP2 8 68 IPR001471 GO:0003700|GO:0006355
Cmo06g00454 170 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cmo06g00454 170 MobiDBLite consensus disorder prediction 149 170 - -
Cmo06g00454 170 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700|GO:0006355
Cmo06g00454 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 169 - -
Cmo06g00454 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 169 - -
Cmo06g00454 170 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Cmo06g00454 170 Pfam AP2 domain 8 59 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00454 Cmo14g00277 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00454 Cmo-Chr6:2168177 Cmo15g01261 Cmo-Chr15:8654286 8.73E-42 dispersed
Cmo18g01239 Cmo-Chr18:12227522 Cmo06g00454 Cmo-Chr6:2168177 1.65E-43 dispersed
Cmo14g00276 Cmo-Chr14:1249457 Cmo06g00454 Cmo-Chr6:2168177 2.77E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9930 PF00847 AP2 8.30E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00454 - - csv:101203380 233.417