Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00500 ATGTCCTTAAACCACTTCTCTTCAGACTGCCATCTCCACCACCCCAAATCCTCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAATATTTCCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCAGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAATCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTATGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCCGAACAGCCCTCGACGCTCGGTGGCGGATCGGGTCTATCGGGTCAAGATCCAACCCGTCACAGCTTCTACACACACTGA 735 54.15 MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQSYDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHSFYTH 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2406026 2407883 + CmoCh06G005000.1 Cmo06g00500 384062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00500 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 222 - -
Cmo06g00500 244 CDD B3_DNA 34 130 IPR003340 GO:0003677
Cmo06g00500 244 Gene3D - 27 151 IPR015300 -
Cmo06g00500 244 ProSiteProfiles B3 DNA-binding domain profile. 36 141 IPR003340 GO:0003677
Cmo06g00500 244 SUPERFAMILY DNA-binding pseudobarrel domain 31 141 IPR015300 -
Cmo06g00500 244 SMART B3_2 36 141 IPR003340 GO:0003677
Cmo06g00500 244 Pfam B3 DNA binding domain 36 140 IPR003340 GO:0003677
Cmo06g00500 244 MobiDBLite consensus disorder prediction 165 186 - -
Cmo06g00500 244 MobiDBLite consensus disorder prediction 216 244 - -
Cmo06g00500 244 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 222 IPR044800 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00500 Cmo16g00647 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00500 Cmo-Chr6:2406026 Cmo16g00647 Cmo-Chr16:3189084 3.38E-50 dispersed
Cmo14g00327 Cmo-Chr14:1506867 Cmo06g00500 Cmo-Chr6:2406026 1.65E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9934 PF02362 B3 8.00E-31 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00500 - - bhj:120091802 340.887