Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00500 | ATGTCCTTAAACCACTTCTCTTCAGACTGCCATCTCCACCACCCCAAATCCTCCGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAATATTTCCCACTTTCCCCCGGCGGCGACACGGCGGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGGTGGAAGCGGCGCTCGCCAGTGTCCACGGCGGAGACGGCGGCGGCGACTAGAATCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATCATCATAATCATAATCATCTTCCTTCACCGCCATACCAATCTTATGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCCGAACAGCCCTCGACGCTCGGTGGCGGATCGGGTCTATCGGGTCAAGATCCAACCCGTCACAGCTTCTACACACACTGA | 735 | 54.15 | MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHHNHNHLPSPPYQSYDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEQPSTLGGGSGLSGQDPTRHSFYTH | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2406026 | 2407883 | + | CmoCh06G005000.1 | Cmo06g00500 | 384062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00500 | 244 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 | 20 | 222 | - | - | |
Cmo06g00500 | 244 | CDD | B3_DNA | 34 | 130 | IPR003340 | GO:0003677 | |
Cmo06g00500 | 244 | Gene3D | - | 27 | 151 | IPR015300 | - | |
Cmo06g00500 | 244 | ProSiteProfiles | B3 DNA-binding domain profile. | 36 | 141 | IPR003340 | GO:0003677 | |
Cmo06g00500 | 244 | SUPERFAMILY | DNA-binding pseudobarrel domain | 31 | 141 | IPR015300 | - | |
Cmo06g00500 | 244 | SMART | B3_2 | 36 | 141 | IPR003340 | GO:0003677 | |
Cmo06g00500 | 244 | Pfam | B3 DNA binding domain | 36 | 140 | IPR003340 | GO:0003677 | |
Cmo06g00500 | 244 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - | |
Cmo06g00500 | 244 | MobiDBLite | consensus disorder prediction | 216 | 244 | - | - | |
Cmo06g00500 | 244 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 20 | 222 | IPR044800 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00500 | Cmo16g00647 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00500 | Cmo-Chr6:2406026 | Cmo16g00647 | Cmo-Chr16:3189084 | 3.38E-50 | dispersed | |
Cmo14g00327 | Cmo-Chr14:1506867 | Cmo06g00500 | Cmo-Chr6:2406026 | 1.65E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9934 | PF02362 | B3 | 8.00E-31 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00500 | - | - | bhj:120091802 | 340.887 |