Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00525 ATGGCGACGTACCTTCATGCCAATTCTGAGTTTCAATCTGCTGCTGATGCTGGCCTTCAAACCCTTGTCTTAATGAATCCCGGCTATGTTCAATTCTCCGACACCCCACCGCCGCCTTCATCGCCGCCTCCTTCACACCCTAATCTTGTTTTCTTCAATTCTGCTACGCCTGCTAATGCCTACTCTGCACAGACTCTGCCTCACCCGCCTTCTCATGCTCAACAGTTTGTCGGCATCCCACTACCGTCGACAACAACCGCTTCTCCGACGTCTCAAGACCATAATTTGTATTCCTTCAATACCCACCATGATATCTCCGCCTTACATGGCTTCGTTCCTCGTGTTCAGTATGATATTTGGAAACCAATTAACCCATCCACGACGGCGCGTGAGACTTCACGCGCACAACAGGGTTTGTCTTTGAGTCTGTCTTCACAGCAGGGTTTTGGGTCGAGAGAGATTCAATCGCAAACCCATCAGGCGGTTTCCGGAGAGGAGAACGTTCGGATCTCCGGTGGATCGTCTTCCTCTGCTTCCGGTATCACCAATGGGGCGGCTGGAATTCAGGGCGTTTTAATTAGTTCGAAGTATCTCAAGGCTGCTGTAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGGATTAAGAACGAATCGTCTCCTAAAAAGGCCGCCGGAAATCAAAACAAGATGAATGGAGATGCATCCGCCGCCGCCACAACTGCCGATGGTTCTTTCGAAGGAGAAGGCGACGGGAAACGCGCCGCCGATTTAACGACTGCCGAGAGACAAGAAATTCAAATGAAGAAAGAAAAGCTCATCAGTATGCTCGATGAGGTAGAGCAGAGGTACAGACACTACCACCACCAAATGAAGATAGTGATATCCACATTTGAAAAGGCGGCCGGAGCTGGGTCGGCAAGAACCTACACCGCGCTGGCACTTCAGACAATTTCGAAGCAATTCCGGTGCTTAAAAGACGCAATCACCGGCCAAATCAAGGCGGCGAACAAGAGTTTAGGAGAAGAAGAATACAACGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTTGATAACCATCTCCGGCAACAGCGAGCTCTGCAACAATTGGGTATGATCCAACACAATGCGTGGAGACCCCAACGAGGCTTACCGGAGCGATCCGTTTCGATTCTTCGCGCTTGGCTGTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAGGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTATTTGGAGGAAGTCAAGGAACAAGAACAGAACGGCGGTGGCGGATTGGCACCGTCGACGGCTGCGGAAAAAAGCAACGACGATTCAGATTCAAAAAGCCCAAATTCAAAACAAGAAAACTCTCCAAACCAAAACGTTCATCCTTCAGTCTCAATCTCAACGTCCTCCGATGGAAATGTTCGAAACCCATCTGGGTTTACCCTCATCGGAACTTCATCGGAGCTCGACGGAATCACTCAACGAAGCCCCAAGAAACAGAGAGGCACTGAAATCCTCTATTCCTCAAACAACAACAACAACAACGTCCAGTTCATAAACATGGACATCAAACTCCGAGAAGAAGAACAACAAAATCAAAATCTCCATCGTCTTCCAATGAAATTCGACGAGGAAAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATGGCCGGATTCGGGCAATACCCAATCGGAGAAATCAGCCGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCATTGAGTCTAGGCCTTCCCCATGGCGAAAATCTCTCCCTAAACGCAGCCACCCACCAAGCCTTTCTCCCAAATCAAAGCATCCATTTAGGAAGAAGAACAGAAATGGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCAACACCTCACTCCTCCACTGCATTTGAAACCATCAACATCCAAAATGGCAAGAGGTTTGCAGCTCAGTTACTACCGGACTTCGTGGCCTGA 2100 48.62 MATYLHANSEFQSAADAGLQTLVLMNPGYVQFSDTPPPPSSPPPSHPNLVFFNSATPANAYSAQTLPHPPSHAQQFVGIPLPSTTTASPTSQDHNLYSFNTHHDISALHGFVPRVQYDIWKPINPSTTARETSRAQQGLSLSLSSQQGFGSREIQSQTHQAVSGEENVRISGGSSSSASGITNGAAGIQGVLISSKYLKAAVELLDEVVNVTQNGIKNESSPKKAAGNQNKMNGDASAAATTADGSFEGEGDGKRAADLTTAERQEIQMKKEKLISMLDEVEQRYRHYHHQMKIVISTFEKAAGAGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEEYNGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVRLWKPMVEEMYLEEVKEQEQNGGGGLAPSTAAEKSNDDSDSKSPNSKQENSPNQNVHPSVSISTSSDGNVRNPSGFTLIGTSSELDGITQRSPKKQRGTEILYSSNNNNNNVQFINMDIKLREEEQQNQNLHRLPMKFDEERQNRDGYSFLGQPHFNMAGFGQYPIGEISRFDADQFTPRFSGNNGVSLSLGLPHGENLSLNAATHQAFLPNQSIHLGRRTEMGKPTDFSAINASTPHSSTAFETINIQNGKRFAAQLLPDFVA 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2534813 2538396 + CmoCh06G005250.1 Cmo06g00525 384087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00525 699 SMART prehox3 186 332 IPR006563 -
Cmo06g00525 699 MobiDBLite consensus disorder prediction 450 540 - -
Cmo06g00525 699 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Cmo06g00525 699 MobiDBLite consensus disorder prediction 217 255 - -
Cmo06g00525 699 Gene3D - 383 445 - -
Cmo06g00525 699 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Cmo06g00525 699 MobiDBLite consensus disorder prediction 217 240 - -
Cmo06g00525 699 MobiDBLite consensus disorder prediction 156 180 - -
Cmo06g00525 699 SUPERFAMILY Homeodomain-like 381 446 IPR009057 -
Cmo06g00525 699 Coils Coil 264 284 - -
Cmo06g00525 699 MobiDBLite consensus disorder prediction 480 540 - -
Cmo06g00525 699 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 7 649 - -
Cmo06g00525 699 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 649 - -
Cmo06g00525 699 CDD homeodomain 380 441 IPR001356 GO:0003677
Cmo06g00525 699 SMART HOX_1 380 444 IPR001356 GO:0003677
Cmo06g00525 699 Pfam Associated with HOX 191 331 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00525 Cmo14g00358 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00381 Cmo-Chr2:1948698 Cmo06g00525 Cmo-Chr6:2534813 1.84E-83 dispersed
Cmo06g00525 Cmo-Chr6:2534813 Cmo20g00834 Cmo-Chr20:4158381 1.79E-95 dispersed
Cmo14g00358 Cmo-Chr14:1624151 Cmo06g00525 Cmo-Chr6:2534813 0 wgd
Cmo02g01345 Cmo-Chr2:8012929 Cmo06g00525 Cmo-Chr6:2534813 3.60E-173 wgd
Cmo20g00164 Cmo-Chr20:823761 Cmo06g00525 Cmo-Chr6:2534813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9936 PF07526 POX 9.30E-47 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00525 - - csv:101208201 1063.91