Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00526 ATGGAAGAAATCGAAGTCCCCAACTACTTCCTCTGCCCAATCTCCCTCCAAATCATGAAAGACCCCGTCACCGTCCCCTCCGGCATCACCTACGACCGCCCCTCCATCGAAACCTGGCTCTTCTCCAACAAAAACGCCTCCTGCCCCATCACCAAGCTCCCCATCCCCGCCGACTCCGACTCCCTCACCCCCAATCACACCCTCCGCCGCCTAATCCAAGCCTGGTGCACTCTCCACTCCCATCATGGCATCGAACGCTTCCCCACTCCCAAGCCCCCCATCAACAAGCCACAAATCCACAAACTCATCTCCTCCTCTTCCTCTACTCCCTCCTCCCTTCTCTCCTGCATTCGCCGCCTCCGTTCCCTCGCCGCTGAATCCGAATCCAACCGCCGATGCATCGAATCCGCCGGCGCCCCTGAGTTTCTAGCCTCTGTTATCATCAATTCCATCTCCGACAACGACAACGAAACCGCCTCGATTTCCTGCCATGAAGCGCTTTCCACTCTCCATAATCTCCGCCTCTCCGATTCCAAGTTGAAGAGCTTGACCGTAAACGCCGAGCTTTTTGATTCGTTGACGAAGGTCATGGAACAGGGGACGTACGAGTCACGAGCGTACGCGGCGTTGCTTTTTAAATCATTACTGGAAGTGGCCGACCCAATGGAGCTGACATTCCTAAAATCCGAACTGTTTGTGGAAATTGTTGGGATTTTGAAGGATCAGACATCGCAGCAGAGTTTGAAAGCGGCATTGGGGATTTTGATTACGGCCTGCACATGGGGGAGGAACAAAGTGAAGGCGGTTGAGGCAGGTGGGGTTGTGGCTTTGGTCGAGATATTACTCTCGGGACCGGAGAGGAGGGTGTCCGAGATGGCGTTGACGGCGATGGATTTGCTATGTGGGTGTGCAGAAGGGCGAGCGGCGCTTCTGGGTCACGGCGGAGGGATGGCAGTGGTTTCGAAGAAGATCTTGAGAGTGTCGCAAGTGGGGAGTGAGAGGGCGGTTAGGATTCTGTTTTCGGTGGCGAAATATTCAGGGAGTCCGGCGGTGTTGACGGAAATGGCGCAGTTGGGGATCGTGGCGAAGCTTTGCCTGGTTCTGCAAGTTGAAAGTGGGAGCAAGACAAAGGAGAAGGCCAAAGAAATTTTGAAGATGCATGCTCGAGTTTGGAGGAATTCGGCTTGTATTCCTTCCAAATTGGCTTCTTCTTATCCTGCAAATTAA 1227 54.03 MEEIEVPNYFLCPISLQIMKDPVTVPSGITYDRPSIETWLFSNKNASCPITKLPIPADSDSLTPNHTLRRLIQAWCTLHSHHGIERFPTPKPPINKPQIHKLISSSSSTPSSLLSCIRRLRSLAAESESNRRCIESAGAPEFLASVIINSISDNDNETASISCHEALSTLHNLRLSDSKLKSLTVNAELFDSLTKVMEQGTYESRAYAALLFKSLLEVADPMELTFLKSELFVEIVGILKDQTSQQSLKAALGILITACTWGRNKVKAVEAGGVVALVEILLSGPERRVSEMALTAMDLLCGCAEGRAALLGHGGGMAVVSKKILRVSQVGSERAVRILFSVAKYSGSPAVLTEMAQLGIVAKLCLVLQVESGSKTKEKAKEILKMHARVWRNSACIPSKLASSYPAN 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2541838 2543064 + CmoCh06G005260.1 Cmo06g00526 384088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00526 408 SUPERFAMILY ARM repeat 102 392 IPR016024 -
Cmo06g00526 408 SUPERFAMILY RING/U-box 3 85 - -
Cmo06g00526 408 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Cmo06g00526 408 Gene3D - 94 406 IPR011989 -
Cmo06g00526 408 PANTHER WDSAM1 PROTEIN 1 406 IPR045185 GO:0061630
Cmo06g00526 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 406 - -
Cmo06g00526 408 CDD RING-Ubox_PUB 10 52 IPR045210 -
Cmo06g00526 408 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Cmo06g00526 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Cmo06g00526 408 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00273 Cmo-Chr3:3990423 Cmo06g00526 Cmo-Chr6:2541838 5.56E-152 dispersed
Cmo04g00079 Cmo-Chr4:427713 Cmo06g00526 Cmo-Chr6:2541838 3.34E-57 dispersed
Cmo06g00526 Cmo-Chr6:2541838 Cmo07g01224 Cmo-Chr7:6671103 3.14E-141 dispersed
Cmo20g00163 Cmo-Chr20:820835 Cmo06g00526 Cmo-Chr6:2541838 9.13E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00526 - - csv:101208445 568.926