Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00530 | ATGAACGATTTGTTCTCCTCTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACGGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGACGAACTCAAGGAGCTTGAGAAACTCTACCAGAACCTCTACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCGGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTGGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACCGGACTCGGACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTACAGGGAGACCGTGCAGCGGAGGTATTTCACTGTTACTGGTGAAAATCCGGATGAGAAAACCATTGATATCTTGATATCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGAAGGAGCTGCACCAGGTTTTCATGGACATGGCGGTCTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTGATCGTTGCCTTGATCATTATCCTCAGCCTGCGGCCTTGGACTTGGAATGGTGGTAATAGTAGTGGCTCTACTCCAGCCCCTTCAACTCCAACCCCCTCAGCCCCAACTCCTCCAACCCCCTGA | 969 | 49.02 | MNDLFSSRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDELKELEKLYQNLYDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGNSSGSTPAPSTPTPSAPTPPTP | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2569877 | 2572058 | + | CmoCh06G005300.1 | Cmo06g00530 | 384092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00530 | 322 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
Cmo06g00530 | 322 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
Cmo06g00530 | 322 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 | |
Cmo06g00530 | 322 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 | |
Cmo06g00530 | 322 | MobiDBLite | consensus disorder prediction | 301 | 322 | - | - | |
Cmo06g00530 | 322 | PANTHER | SYNTAXIN | 9 | 300 | IPR045242 | - | |
Cmo06g00530 | 322 | Gene3D | - | 198 | 293 | - | - | |
Cmo06g00530 | 322 | Coils | Coil | 31 | 58 | - | - | |
Cmo06g00530 | 322 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020|GO:0016192 | |
Cmo06g00530 | 322 | Coils | Coil | 204 | 224 | - | - | |
Cmo06g00530 | 322 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Cmo06g00530 | 322 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Cmo06g00530 | 322 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020 | |
Cmo06g00530 | 322 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 300 | - | - | |
Cmo06g00530 | 322 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Cmo06g00530 | 322 | Gene3D | - | 28 | 161 | - | - | |
Cmo06g00530 | 322 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00530 | Cmo-Chr6:2569877 | Cmo14g00363 | Cmo-Chr14:1665244 | 9.12E-169 | dispersed | |
Cmo06g00530 | Cmo-Chr6:2569877 | Cmo07g00850 | Cmo-Chr7:4017505 | 4.31E-144 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00530 | K08486 | - | csv:101208931 | 504.597 |