Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00530 ATGAACGATTTGTTCTCCTCTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACGGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGACGAACTCAAGGAGCTTGAGAAACTCTACCAGAACCTCTACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCGGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTGGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACCGGACTCGGACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTACAGGGAGACCGTGCAGCGGAGGTATTTCACTGTTACTGGTGAAAATCCGGATGAGAAAACCATTGATATCTTGATATCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGAAGGAGCTGCACCAGGTTTTCATGGACATGGCGGTCTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTGATCGTTGCCTTGATCATTATCCTCAGCCTGCGGCCTTGGACTTGGAATGGTGGTAATAGTAGTGGCTCTACTCCAGCCCCTTCAACTCCAACCCCCTCAGCCCCAACTCCTCCAACCCCCTGA 969 49.02 MNDLFSSRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDELKELEKLYQNLYDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGNSSGSTPAPSTPTPSAPTPPTP 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2569877 2572058 + CmoCh06G005300.1 Cmo06g00530 384092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00530 322 MobiDBLite consensus disorder prediction 102 124 - -
Cmo06g00530 322 Pfam SNARE domain 237 289 IPR000727 -
Cmo06g00530 322 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Cmo06g00530 322 SMART SynN_4 26 152 IPR006011 GO:0016020
Cmo06g00530 322 MobiDBLite consensus disorder prediction 301 322 - -
Cmo06g00530 322 PANTHER SYNTAXIN 9 300 IPR045242 -
Cmo06g00530 322 Gene3D - 198 293 - -
Cmo06g00530 322 Coils Coil 31 58 - -
Cmo06g00530 322 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Cmo06g00530 322 Coils Coil 204 224 - -
Cmo06g00530 322 CDD SNARE_syntaxin1-like 200 262 - -
Cmo06g00530 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cmo06g00530 322 CDD SynN 31 188 IPR006011 GO:0016020
Cmo06g00530 322 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 300 - -
Cmo06g00530 322 SMART tSNARE_6 196 263 IPR000727 -
Cmo06g00530 322 Gene3D - 28 161 - -
Cmo06g00530 322 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00530 Cmo-Chr6:2569877 Cmo14g00363 Cmo-Chr14:1665244 9.12E-169 dispersed
Cmo06g00530 Cmo-Chr6:2569877 Cmo07g00850 Cmo-Chr7:4017505 4.31E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00530 K08486 - csv:101208931 504.597