Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00541 ATGTCCCGATTATCCGCCACCACCCGTTTCTCGCTCCTCTTCTTCTCCAACTTCAACCTCAACCTCAACCCCACCCGTTTTCTCTCTCTATTCAACCCTTCTCGCCTCTCTTTCTCCACTCTCCATCTCTGCAAGTCCCTCGCTCGCCTTCTTGCCTCCAAAACCCTAGCCCTTTTCACCATGGACGATCTCTTCCCCAATGACGATGATTTCTGGGACCTCGATGTGGGTTCCCGTTCCCGCCCCCCACAGCGCCCCCGCCTCCTCGATGACTATGATTATGACGACAATGATCCCGAAAAGGTCTACTTTGTTCCCTTCAGGTGGCTGCAGGAAACTCAAAATGATAGCGATCAAGTAGTAGGTGTTTTATATAGTGTGTCATCAGATGAAGATGCTGATTCAGGAATTCTTTTGGAGCTGAGGAAACAAGAAGTTTGCACAAAATATGATGGTGTTGAAGAGAGGTCTTCTGGTCGTGAATACGCCTTGATTGGGGAAGCTTTGTGGTTGCAGGCTCTAAAGCGGCATAGTGATGTTAAAACAACATCAAATTATGCTGGCCGACTCTTCAGAGATGAAGAAACGTTGCAGGATGTTTTTCCTTTGCAAATTAGGATCTTGGTATCATGGGAGACAAATTTGTTAGCTGTGAAGATAAATCGAAAGGATAACTTAGCCGACTATTATAAGAGAGCTTCCATTATTTTCAATTCTAGCTCTGAACCGTTTCACATTTGGGACTTCTCAGGGCAAACAAATCAGCTTTTCGCAAATAATATGAACAATTTTCTTGATGATTCTCCTGTTCAACGAGTTAAAGAGGTCCGACTCGAGTTGCAAGTCCATGATGTTTTGGACAATATGATGGATAGATATGAGAAGGTTGCTAATCTAACTGAAGAGCTAAAGACTGAGGAGTCCCCCATTATCATAAATGGGATTATGGATAACGCGAAATCTTATTTGACTGAATCCAACCCTATGATACGTGGAAACAGTTTCAGGGTAGCCAGTTCCATGGGTTTGACAGGATTACAAAATCTTGGGAATACTTGCTTCATGAATAGTGCTCTTCAGTGTTTGGTGCATACTCCAAAACTTGTTGATTATTTCCTTGGAAATTTTCAAAAGGAGATCAATTATGAAAACCCTTTGGGGATGAAAGGAGAGCTTGCTTTAGCATTTGGAGACTTGCTCAGGAAACTATGGGCCCCTGGCTCAAAATCAGTGCCTCCAAGAATGTTTAAACTTAAACTTTCTAATTTTGCTCCCCAATTCAGTGGTTATAATCAGCATGATTCCCAGGAATTTCTTGCTTTTTTGTTGGATGGCCTTCATGAAGATCTAAATCGCGTTAAATGCAAGCCATATTTTGAAGCTAAGGATGTGGAGGGCCGCCGTGATGAAGAAGTAGCTGAAGAATGTTGGCAAAATCACATTGCCCGTAATGATTCTATTATAGTCGATTTGTGCCAGGGTCAGTTTCGGTCAACATTGGCATGCCCTGCTTGCAATAAGCTATCAGTTACATTTGATCCATTCATGTACCTATCTCTGCCATTGCCCTCGACATCAGTGCGTAGTATGACCCTGAGGGTCTTTACATGTGATGGGATTACATTGCCTTCTACGTTTACCCTATCAGTGCCAAAGTCCGGAAGATTGAAAGATCTTATTGATGCCTTAAGCACTGCTTGTTCTTTGAGAGAGGATGAGACCCTGTTGGTAGCTGAGGTATACAAGAATCGCATCTTCCGTCTTCTGGAGGATCCATCTGATTCGCTAGCATTGATCAGGAACGAAGACAAGCTTGTTGCTTACAGGTTACCAAGAGATAGTGAACCATCCAAGTTGATTGTTTACGTGCATCAGCAATCTGAAACGCATGATAATTCAGGAAAGCTAATTTTAGGCTCAAAAACATTTGGAGTCCCATTTGTAGCAAGAGTGCCTGACTTTTGTCGTGAATCAGATATTCGTCAGCAGTTCCTCAAGTTTCTTGATCCGTTAAAAATGCCTGAAGATGATACGCTTAGGAACTGTGATGGCGAAGCTGGTATTTCTGGTAATGATGACTTTGAGATGGATGATGCCTCGGGCCCGAAAAACTTGGATACTGATGAGAGTCCAAACAATGGAAATATTGTGAACTCTAGTTTGCCTTCTGATTTCGTATTCTATTTGGCCGAATCACGGGGAGCTTCTGAAGGTACCCTGATCAATCCGGATGAACCTTTAGTTATCTCTGAGTTCACTGAGAGGTTGGATGTTCTTGTCATGTGGCCAGACACGATGATTAATAAATATGATACATGTCTAATGAGTTCACTGCCCGATGTTTTCAAACCACATTTTCTTGCAAGGAGACCTCAAGAGTTTGTCGATTTGTATAAGTGCCTTGAAGCTTTCTTGAAGGAGGAGCCTTTAGGACCCGACGATATGTGGTATTGTCCTAGATGCAAGAAACCTCAGCAAGCTAGAAAAAAGCTGGATCTCTGGAGGTTGCCTGAGATTCTTGTCATTCATCTCAAAAGGTTTTCGTATAGCCGATTTTTGAAGAACAAGCTGGAAACAGTTGTTGATTTCCCAATAGAAGACCTGGATTTTTCAAATTACATCGCTTTCAAGAATAGCCATCTGAGCAATCGTTACATGTTATATGCTGTTAGTAATCACTACGGAGGGATGGGCGCAGGTCACTATACTGCTCATGTTCTTCATGGTGGTAAATGGTATGAGTTCGACGACGATCGAGTTCTCCCTGTGAGCGAAGATGTTGTAAAGTCATCTGCTGCTTATGTTTTATTTTACAGAAGAATCCCAGAAGTATAA 2835 42.54 MSRLSATTRFSLLFFSNFNLNLNPTRFLSLFNPSRLSFSTLHLCKSLARLLASKTLALFTMDDLFPNDDDFWDLDVGSRSRPPQRPRLLDDYDYDDNDPEKVYFVPFRWLQETQNDSDQVVGVLYSVSSDEDADSGILLELRKQEVCTKYDGVEERSSGREYALIGEALWLQALKRHSDVKTTSNYAGRLFRDEETLQDVFPLQIRILVSWETNLLAVKINRKDNLADYYKRASIIFNSSSEPFHIWDFSGQTNQLFANNMNNFLDDSPVQRVKEVRLELQVHDVLDNMMDRYEKVANLTEELKTEESPIIINGIMDNAKSYLTESNPMIRGNSFRVASSMGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGNFQKEINYENPLGMKGELALAFGDLLRKLWAPGSKSVPPRMFKLKLSNFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYFEAKDVEGRRDEEVAEECWQNHIARNDSIIVDLCQGQFRSTLACPACNKLSVTFDPFMYLSLPLPSTSVRSMTLRVFTCDGITLPSTFTLSVPKSGRLKDLIDALSTACSLREDETLLVAEVYKNRIFRLLEDPSDSLALIRNEDKLVAYRLPRDSEPSKLIVYVHQQSETHDNSGKLILGSKTFGVPFVARVPDFCRESDIRQQFLKFLDPLKMPEDDTLRNCDGEAGISGNDDFEMDDASGPKNLDTDESPNNGNIVNSSLPSDFVFYLAESRGASEGTLINPDEPLVISEFTERLDVLVMWPDTMINKYDTCLMSSLPDVFKPHFLARRPQEFVDLYKCLEAFLKEEPLGPDDMWYCPRCKKPQQARKKLDLWRLPEILVIHLKRFSYSRFLKNKLETVVDFPIEDLDFSNYIAFKNSHLSNRYMLYAVSNHYGGMGAGHYTAHVLHGGKWYEFDDDRVLPVSEDVVKSSAAYVLFYRRIPEV 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2610506 2620668 + CmoCh06G005410.1 Cmo06g00541 384103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00541 944 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 344 941 IPR028889 -
Cmo06g00541 944 Gene3D Cysteine proteinases 332 577 - -
Cmo06g00541 944 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 68 942 - -
Cmo06g00541 944 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 68 942 - -
Cmo06g00541 944 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 345 360 IPR018200 GO:0004843|GO:0006511
Cmo06g00541 944 MobiDBLite consensus disorder prediction 678 717 - -
Cmo06g00541 944 Gene3D Cysteine proteinases 765 943 - -
Cmo06g00541 944 CDD Peptidase_C19R 770 939 - -
Cmo06g00541 944 Pfam Ubiquitin carboxyl-terminal hydrolase 344 938 IPR001394 GO:0004843|GO:0016579
Cmo06g00541 944 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 885 902 IPR018200 GO:0004843|GO:0006511
Cmo06g00541 944 SUPERFAMILY Cysteine proteinases 342 940 IPR038765 -
Cmo06g00541 944 Coils Coil 286 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00541 - - K21343 csv:101210657 1574.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00541 Cmo15g01386 CCT
Cmo02g00955 Cmo06g00541 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00541 Cmo-Chr6:2610506 Cmo15g01386 Cmo-Chr15:9435007 0 dispersed
Cmo20g01130 Cmo-Chr20:10928567 Cmo06g00541 Cmo-Chr6:2610506 2.81E-11 transposed
Cmo02g01339 Cmo-Chr2:7973706 Cmo06g00541 Cmo-Chr6:2610506 0 wgd
Cmo20g00156 Cmo-Chr20:772379 Cmo06g00541 Cmo-Chr6:2610506 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
Vvi8g214 . . . . . . . . Cmo06g00541 . . . . . . . Cpe08g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01728 Cam10g1778 Cec10g1827 Cco10g1801 Clacu10g1795 Cmu10g2545 Cre10g1930 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008776 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00541 Cmo_Chr06 FPKM 2.852886 2.642711 2.773484 2.912919 3.27879 3.753992 4.152502 2.220393 2.942155 2.728415