Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00554 ATGGAGAAAACAAGTTCGTTAGGATTGGCGAGGACGAAATCCGATCAACTGTTGGAGAAGGTGGCAGCAGCATTCAAGTCACCGACGACGAGCAGAGAGGCAAATGGGGTGGTGGGGGAGAGTGGTAGCTTGACGTTGTCGAGGAAGCCGAGCAAGCAGACGCTGACAGCTCCTTCGCCGGGGTGTGGCAGTGGCAGTGGTCGAAACACACATATCAGGAAGTCTAGGAGTGCACAACTGAAGCTGGATTTGGATGACTTGGGCAGTGGTGCAGCCCTGAGTAGAGCTTCAAGTGCTAGCTTGGGCTTGTCATTCTCCTTCACTGGCTTCACACTGCCACCTGATGAAATTGCTGATTCCAAGACATTTAGTGATGAAGATATACCAGAGGATGTACAAGCAGGAACACGCAAGGCCAGATTTCAAACAGAACCAACCATGCCTATTCATCTCAAGTTCACAGATGTTACTTATAAAGTAATTATAAAAGGACTGCGGACAAATGTGGAGAAGGAGATCCTGAACGGGATTACCGGTTTGGTACACCCAGGCGAAGTTCTGGCCTTAATGGGACCTTCTGGAAGTGGCAAGACAACATTACTCAATCTGCTCGGAGGGCGGCTCATACGATCTACAGTTGGTGGTTCAATTACCTACAATGATCAACCATACAATAAGATAGGATTCGTGATGCAGGAGGATGTTCTATTTCCCCACTTGACAGTGAAAGAAACATTGAGATATGCAGCTTTGCTACGACTGCCAAGAGCATTGACAAAAGAGCAAAAGGAAAAGCGTGCTATGGACATTATCTATGAGCTGGGCCTTGAAAAGTGCCAGGATACAATGATTGGTGGCTCCTTCGTCCGTGGGGTTTCGGGTGGAGAAAGGCGTCGGGTCTGTATAGGCAATGAGATCTTAATCAACCCCTCTCTCCTCTTTCTTGATGAACCAACCTCAGGCTTGGATTCTACAACTGCATTGAGAATTGTTCAGATTTTACATGAGATAGCTGAAGCTGGGAAGACCGTGGTGACAACGATTCACCAACCATCAAGCAGACTATTCCACAACTTCGACAAGCTAATTCTTCTTGGGAAGGGAAACTTAATCTACTATGGAAAAGCAGCAGAAGCAATGAACTATTTCTCATCTATAGGATGTTCCCCACTTATTGCAATGAATCCTGCTGAGTTCTTGCTTGACCTTGCAAATGGCAACCTCAATGATGTGTCTGTTCCATCAGAGCTAGAGGATAAGGTGCAAGTAGAGAATTCTGAGCCTGACAGTAGGCTCGATAGGCCTTCTCCAGCTCTTGTGCAGGAGTATCTTGTGGAGGCTTACGAGACGAGGGTTGCAGAGAAGGAAAAGAGGAAGATGCTCGCACCTCTAATGCTCGACGAAGAGCTGAAATCGAAGGTGAAGTCTTCGAAAAGGCAATGGGGAGCGAGCTGGTGGGAACAATATTCGATACTGTTCCATAGAGGAATTAAAGAAAGACGCCATGAATACTTCAGCTGGCTGAGAATCACTCAAGTTCTCGCCACCGCCGTTATCTTAGGGTTACTGTGGTGGCGATCGGAAAGTGGCACTCCAAAAGGCTTGCATGACCAGGCTGGATTGCTGTTCTTCATAGCAGTGTTTTGGGGATTCTTCCCAGTGTTTACAGCAATATTCACATTCCCTCAAGAAAGAGCAATGCTAAACAAAGAAAGAGCGGCTGATATGTACAGATTCAGCGCTTACTTTTTGGCAAGAACCACAAGTGATCTTCCACTTGATCTTTTGTTGCCTATTCTTTTCCTTCTCGTTGTCTACTTCATGGCAGGCCTAAGGCTTAGCGCTGCTCCTTTCTTCCTCACCATGGTCACTGTCTTCCTCTGCATAGTGGCTGCTCAGGGCCTTGGCTTGGCTATTGGAGCTACACTCATGGATGTCAAGAAGGCCACGACTTTAGCCTCGGTCACCGTCATGACCTTCATGCTTGCCGGTGGATTCTTTGTACAAAAAGTTCCGGTGTTCGTGTCTTGGATCCGTTTCGTGTCATTCAACTATCACACATACAAGCTTCTCCTAAAGGTGCAGTACAACAACATCCTACCTACCGTAAAGGGTATGAAAATGGACAACGGAGTAGTCGAAGTTACTGCTCTGATCGCCATGGCTTTCGGGTATCGTCTCTTAGCTTACATTTCGTTGAGGAGGATGAAACTATCAGGAGTTTAA 2226 46.9 MEKTSSLGLARTKSDQLLEKVAAAFKSPTTSREANGVVGESGSLTLSRKPSKQTLTAPSPGCGSGSGRNTHIRKSRSAQLKLDLDDLGSGAALSRASSASLGLSFSFTGFTLPPDEIADSKTFSDEDIPEDVQAGTRKARFQTEPTMPIHLKFTDVTYKVIIKGLRTNVEKEILNGITGLVHPGEVLALMGPSGSGKTTLLNLLGGRLIRSTVGGSITYNDQPYNKIGFVMQEDVLFPHLTVKETLRYAALLRLPRALTKEQKEKRAMDIIYELGLEKCQDTMIGGSFVRGVSGGERRRVCIGNEILINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTVVTTIHQPSSRLFHNFDKLILLGKGNLIYYGKAAEAMNYFSSIGCSPLIAMNPAEFLLDLANGNLNDVSVPSELEDKVQVENSEPDSRLDRPSPALVQEYLVEAYETRVAEKEKRKMLAPLMLDEELKSKVKSSKRQWGASWWEQYSILFHRGIKERRHEYFSWLRITQVLATAVILGLLWWRSESGTPKGLHDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRFSAYFLARTTSDLPLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLCIVAAQGLGLAIGATLMDVKKATTLASVTVMTFMLAGGFFVQKVPVFVSWIRFVSFNYHTYKLLLKVQYNNILPTVKGMKMDNGVVEVTALIAMAFGYRLLAYISLRRMKLSGV 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2680272 2687548 - CmoCh06G005540.1 Cmo06g00554 384116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00554 741 ProSitePatterns ABC transporters family signature. 292 306 IPR017871 GO:0005524
Cmo06g00554 741 SMART AAA_5 183 369 IPR003593 -
Cmo06g00554 741 Pfam ABC-2 type transporter 488 696 IPR013525 GO:0016020|GO:0140359
Cmo06g00554 741 MobiDBLite consensus disorder prediction 26 75 - -
Cmo06g00554 741 Pfam ABC transporter 174 320 IPR003439 GO:0005524
Cmo06g00554 741 PANTHER ABC TRANSPORTER G FAMILY MEMBER 22 36 737 - -
Cmo06g00554 741 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 392 IPR003439 GO:0005524
Cmo06g00554 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 384 IPR027417 -
Cmo06g00554 741 MobiDBLite consensus disorder prediction 28 73 - -
Cmo06g00554 741 Gene3D - 150 386 IPR027417 -
Cmo06g00554 741 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 737 - -
Cmo06g00554 741 CDD ABCG_EPDR 148 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00554 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213089 1259.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00554 Cmo16g00550 CST
Cmo06g00554 Cmo14g00380 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00554 Cmo-Chr6:2680272 Cmo16g00550 Cmo-Chr16:2653973 0 dispersed
Cmo14g00380 Cmo-Chr14:1764260 Cmo06g00554 Cmo-Chr6:2680272 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
Vvi8g187 . . Bda01g00414 . Bpe04g01475 Bpe03g01181 Bma04g01522 Bma10g00140 Cmo06g00554 Cmo14g00380 . . . . . . Cpe08g00945 . . . . . . . . . . . . . . Cone3ag0122 Cone10ag0105 . Cone19ag0443 . . . . . Blo09g00453 Bda03g01617 Bda05g01118 . Bpe02g00689 Bma01g02025 . . . . Cma06g00550 Cma14g00381 Car06g00489 Car14g00350 Cpe03g00333 . Bhi11g02455 . . . . . . Cla10g01716 Cam10g1765 Cec10g1814 Cco10g1786 Clacu10g1782 Cmu10g2532 Cre10g1917 Lsi03g01787 Csa03g03525 Chy04g01828 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003327 3 4 3 3 3 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00554 Cmo_Chr06 FPKM 5.189846 4.718867 7.081992 6.938597 5.028647 4.974962 4.613972 5.903486 6.055453 6.15303