Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00593 ATGGCGGCTTCTTCAATTTCCTTCACCCTTACTTCTCCATTCCTCTCTTCTTCCAGGCTTCACCCCACCGCCAAATCCCTCTCCTTCTCCTTCGCTCCTCCATTCCCCAAATCCTCTTCTCCTTTCCGGACCCTTTTCCCCATTGCTTCCAATTCCTCCTCTAAACCCTCAATTCCATCTCCCATTGACTCCTCGAGTTCTTTCGCCGCCCCTTCGCTTGCCTTCAATCCAACATTGAAGTCCCGTCTCCGCAATGGCGAAACCCTCTACGGTCTCTTCCTCCTCTCCTTCTCCCCCACTCTTGCCGAGATCGCCGGTCTCTCCGGCTACGATTTCGTCGTCGTCGACATGGAGCACGGCTACGGCGGAATCTCTGATGCCCTCCCCTGTCTCCGCGCCCTCTCCGCCACTCAAACTCCAGCCATTCTCCGCATCCCCGAGAGCTCCGCCGCCTGGGCCAAAAAGGCCCTAGATTTAGGACCGCAGGGTATCATGTTTCCAATGATCGATTCGTCCAAAGATGCGAAAAAAGCTGTTTCATATTGCAGATTCCCACCCGCTGGAGTCCGTGGATCGGCCCATCCAGTGGTTAGAGCATCGAAATACGGCATTGACGAAGGGTATTTGACAAATTACGAGGACGAATTACTGATTATGTGTCAGATTGAATCGGAGCAAGCGGTGAAGAAGATAGATGACATAATGGAAGTGGATGGGGTTGATTGCATTCAAATGGGGCCATTGGACATGAGTGGAAGCATGGGATATCTATGGGACCCTGGACACAAGAAGGTTAGAGAAATGATGAGAAAGGCAGAAAAGGCTGTTTTGGAGAGCAAAAGTAAAAGTAAAAATGGTGAGAAGGGAGCCTTCTTATGTGGGTTTTCAATGCCTCATGATGGGCCAATTGACATGAGGAAGCGTGGATATCAGATGATTTCTGGAGCTGTTGATATTGGTTTGTTTAGAACTGCTGCTGTTGAGGATGTGAGGAAGTTTAGAATGAGCGAAATGGAAGACTCTGAGGATTTGGATCAGCCTCTTACTCACAAGGAAGAGGATGAAGAAGATAAGTTTCTTCTTCAGCATGTTGTGATTTTGTTGCAGATCCATAGTGTAATCTGCTATCAGTACAAAGTTGGAGATTTGGATTCATGGGGTCTTCCCACTTCTGAAAATCCAAAGATCTATATGTATTGGTCTAAATATCACTCTCTCAAGATTGGTGATTCTCTGATGTTCTTGTATCCACCAAGCCAAGATTCAGTGATTCAAGTTACAAAGGAATCGTACAACAGCTGCAATCTCAAGGATCCAATCTTGTCCATGAAAGATGGTAACTCTGTTTTCAATATCACTACTTATGGGGATCTGTTCTTCACCAGTGGAGTTGCAGGCCACTGTGAGAAGAATCAGAAGCTTCATATCTCTGTGCTTTCTGGAAATGGTTCTTCTGCAAGCGCTCCATCTTCTGATGGTGCACTTCCTGAAATCTCCCCCTCTTACCCCACTGTTTTTGGTGGAATCCCAGCAGCTCCCATGGCCAATTCCAGCTCTTCCTCGTCCTCATTGTCAACAAAACTCTCATTTTTTCCTGTCTTGGTTGCTGCTTTTGCTGGGCTTTTGATTCTGAGCCAATGA 1641 47.23 MAASSISFTLTSPFLSSSRLHPTAKSLSFSFAPPFPKSSSPFRTLFPIASNSSSKPSIPSPIDSSSSFAAPSLAFNPTLKSRLRNGETLYGLFLLSFSPTLAEIAGLSGYDFVVVDMEHGYGGISDALPCLRALSATQTPAILRIPESSAAWAKKALDLGPQGIMFPMIDSSKDAKKAVSYCRFPPAGVRGSAHPVVRASKYGIDEGYLTNYEDELLIMCQIESEQAVKKIDDIMEVDGVDCIQMGPLDMSGSMGYLWDPGHKKVREMMRKAEKAVLESKSKSKNGEKGAFLCGFSMPHDGPIDMRKRGYQMISGAVDIGLFRTAAVEDVRKFRMSEMEDSEDLDQPLTHKEEDEEDKFLLQHVVILLQIHSVICYQYKVGDLDSWGLPTSENPKIYMYWSKYHSLKIGDSLMFLYPPSQDSVIQVTKESYNSCNLKDPILSMKDGNSVFNITTYGDLFFTSGVAGHCEKNQKLHISVLSGNGSSASAPSSDGALPEISPSYPTVFGGIPAAPMANSSSSSSSLSTKLSFFPVLVAAFAGLLILSQ 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2927680 2930507 + CmoCh06G005930.1 Cmo06g00593 384155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00593 546 PANTHER 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE 74 343 - -
Cmo06g00593 546 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 70 334 IPR015813 GO:0003824
Cmo06g00593 546 Pfam HpcH/HpaI aldolase/citrate lyase family 90 323 IPR005000 GO:0003824
Cmo06g00593 546 CDD OsENODL1_like 376 479 IPR041846 -
Cmo06g00593 546 Gene3D - 376 490 IPR008972 -
Cmo06g00593 546 Pfam Plastocyanin-like domain 395 471 IPR003245 GO:0009055
Cmo06g00593 546 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 74 343 - -
Cmo06g00593 546 Gene3D - 74 344 IPR040442 -
Cmo06g00593 546 SUPERFAMILY Cupredoxins 375 479 IPR008972 -
Cmo06g00593 546 ProSiteProfiles Phytocyanin domain profile. 376 480 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00593 - - - csv:101213205 545.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00593 Cmo-Chr6:2927680 Cmo17g00749 Cmo-Chr17:7389175 5.34E-22 dispersed
Cmo06g00593 Cmo-Chr6:2927680 Cmo08g01127 Cmo-Chr8:7194381 3.34E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013647 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00593 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0