Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00594 ATGGAAACCCAATCAGAAGCCGCAGAAGAAAGCATAGCGAGCATCAAAGACAAGCGTCTGCAACTCGAAGCTCGCATTGTAGCCCAACACACGAACCACTTGGAGCTTCTCTCTTCTGTTCAAGCTCAAATTCCTGGTATTGTTTCTTCTCTCGATCTCTCTCTCAAGCTCGTATCCTCCTTCAATGGCCGCTCCTTTACTCCCACACCGGTTCTCCCTGAACCCAAGAACAAACCCTCTAAATACCCTTTGTCGAGTAGTGATGCTATGCTCCATAAATCCCGCCCTAATCTTCTTCCGTCAGGAGAAGCGAAACCCGCGATTCAGAAGAATCGGAATGCGAAGTCGTATCCGGAATTGAATTCCGATCGTAAGCGAGTTCGCCAGCCTGATGGCGGGAAATTTTCGATTGACGATAGTAGAAGCCCTTTGTCGGTTGTGCGGTCGATGGTGGCGGTTTGTTTACTCGAACGGGTTCATTTTACGGCGATTGATTCTTCGACGGTGTTGAGGAAATTGGAGAATGATCAGAAGGCTACGGCGGCGGAGAAGGCGGCGTTACGAGAATTAGGGGGAGATTCCGGTGCGATATTGGCGGTGGAGATGGCTTTGAGGTCGATGGCGGAGGATAACGGCGGGGTTGAATTGGAGGAGTTTGTTGTGAGTGGGAAGTCTCGAGTGATGGTGTTGGGGATTGATCGTACTCGACTTATGAAGGAATTGCCTGAGAGTGCTGATTTTCAGACGCAGGAATTGAACTCGGGAGAGGGTAACTCCGGCCATAATCAGAACCAGCAAGTGGTGAGTGGTGGTGGTGTGGATGTCAATGGCGGAGTCTTTGGGATGGGAGGGCCAATGCCGAGGCCGATGCCGGAGATGTGGATGGGGCCTGGAGACCCCAATATGCAGGGACTATCACCCATGTTTCCGGGCAGTGGACCTGCAGGGTCAATGGCTGGAGGAAGGGGTGCCCCTAGGATGATGGGAATGATGGGGATGCCTAGAGGGATGGGACTCCCACCATTGCACAGGCCATTGATGGGGCCAAATGTGCCCATGGGTGGCCCCAATTCAATGCCGCAGAAGCCTAAATCTGAGGAGGATGACATGAACGATCTCGAAGCCTTGTTGAACAAGAAGTCGTTTAGAGAATCGCAGAAGTCGAAGACTGGTGAGGAGCTCTTGGACCTAATTCACCGCCCAACTGCCAGGGAAACTGCTGTGGCAGCAAAGTTTAAAACTAAAGGTGGTTCACAACTGAAAGAATACTGCTCATCCTTAACAAAAGAGGACTGTCGGCGTCAATCTGGCTCTTACGTCGCGTGTGAGAAGGTTCATTTTCGGCGAATCATTGCCCCACATACTGACATCAATCTTGGTGACTGCTCTTTTCTTGATACCTGTCGGCACATGAAGACATGCAAGTATGTCCATTACGAACTTGATCCAATTCAAGATGTGCCACCTATGCTGATGGGAGCTGGATCTGTTGCTCCTCCCAAACAACTAAAGCCTCAGCGAGCTGAATATTGTTCGGAGGTAGAACTTGGTGAATCACAATGGATTAACTGTGACATTCGTAATTTTAGAATGGACATTTTGGGGCAATTTGGAGTGATTATGGCAGATCCACCGTGGGATATCCATATGGAATTGCCTTATGGAACAATGGCTGATGATGAAATGCGCAATCTCAACGTTCCTGCGCTACAGACCGATGGTCTGATTTTTCTTTGGGTCACTGGGCGTGCAATGGAACTTGGAAGAGAATGGTGTGTGCTCACTTCTTATTGCCTTTTAGAACAATGGGGATACAAGCGTGTTGAGGAGCTTATATGGGTTAAGACAAATCAACTTCAAAGAATTATTAGAACAGGGCGGACGGGCCATTGGCTCAATCATAGTAAGGAGCATTGCCTTGTTGGAATAAAGGGAAATCCAGAAGTTAACAGGAATATTGACACAGATGTTGTTGTTGCGGAGGTTCGAGAAACAAGTCGTAAACCGGACGAGATGTACCCTTTGCTTGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAATTATTTGCTCGCATGCACAACACTCATGCAGGGTGGATATCTCTTGGTAATCAATTGAATGGAGTGAGGTTGGTTGATGAAGGACTAAGAGCAAGGTTCAAGGCTGCATATCCGAACGTAGAGGTCCAGCCAGCGTCCCCTCCAAGGGCTTCCATGGAAACTGATTCTGGGGCTGCCCAACTCAGGAGTCCCTTCGCAGGATCAGAATCAAAGGCAGCTTATGGGAACCCTACAATTCCTGAGGTACAATATGCAGTGACTACCCCAGATAAAGCCATTGCAGTAGGAGTTGACACGGCTAACTGA 2367 48.88 METQSEAAEESIASIKDKRLQLEARIVAQHTNHLELLSSVQAQIPGIVSSLDLSLKLVSSFNGRSFTPTPVLPEPKNKPSKYPLSSSDAMLHKSRPNLLPSGEAKPAIQKNRNAKSYPELNSDRKRVRQPDGGKFSIDDSRSPLSVVRSMVAVCLLERVHFTAIDSSTVLRKLENDQKATAAEKAALRELGGDSGAILAVEMALRSMAEDNGGVELEEFVVSGKSRVMVLGIDRTRLMKELPESADFQTQELNSGEGNSGHNQNQQVVSGGGVDVNGGVFGMGGPMPRPMPEMWMGPGDPNMQGLSPMFPGSGPAGSMAGGRGAPRMMGMMGMPRGMGLPPLHRPLMGPNVPMGGPNSMPQKPKSEEDDMNDLEALLNKKSFRESQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSSLTKEDCRRQSGSYVACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKTCKYVHYELDPIQDVPPMLMGAGSVAPPKQLKPQRAEYCSEVELGESQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWCVLTSYCLLEQWGYKRVEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVVVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWISLGNQLNGVRLVDEGLRARFKAAYPNVEVQPASPPRASMETDSGAAQLRSPFAGSESKAAYGNPTIPEVQYAVTTPDKAIAVGVDTAN 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2930529 2937178 - CmoCh06G005940.1 Cmo06g00594 384156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00594 788 Pfam MT-A70 537 705 IPR007757 -
Cmo06g00594 788 Coils Coil 788 788 - -
Cmo06g00594 788 MobiDBLite consensus disorder prediction 117 135 - -
Cmo06g00594 788 MobiDBLite consensus disorder prediction 250 270 - -
Cmo06g00594 788 Coils Coil 170 190 - -
Cmo06g00594 788 Coils Coil 5 25 - -
Cmo06g00594 788 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 1 739 - -
Cmo06g00594 788 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 1 739 - -
Cmo06g00594 788 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 517 685 IPR029063 -
Cmo06g00594 788 MobiDBLite consensus disorder prediction 66 139 - -
Cmo06g00594 788 ProSiteProfiles MT-A70-like family profile. 499 725 IPR007757 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00594 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] - csv:101210377 1296.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00594 Cmo16g01270 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00594 Cmo-Chr6:2930529 Cmo16g00233 Cmo-Chr16:1021919 4.18E-31 dispersed
Cmo16g01270 Cmo-Chr16:9060569 Cmo06g00594 Cmo-Chr6:2930529 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009638 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00594 Cmo_Chr06 FPKM 4.912656 2.905253 6.930176 5.630853 4.166828 3.180712 3.556615 0.940595 0.841029 1.190045