Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00621 ATGGCGACTCTCGGTGATATTGGAGTTTCTGCGTTAATCAATATCATCACTGCTTTTGTGTTTCTTCTTGCTTTTGCTCTATTGCGAATTCAACCGATTAACGACAGAGTTTATTTTCCAAAATGGTACATCGATGGCGGCCGAAATAGTCCGCGAGGCTCCAGGAATTTCGTCGGGAAATATGTTAATCTCAACATTTTGACTTATCTCACTTTCTTGAACTGGATGCCTGCGGCTTTGAAGATGAGTGAGGCTGAAATTATTAGTCACGCTGGGTTTGATTCTGCTGTTTTTCTCAGAATTTACACTCTCGGGTTGAAGATATTCTTCCCAATCGCCATTGTTGCTCTTGTTGTTCTTATCCCAGTCAATGTGTCTAGTGGAACACTGTTCTTCTTGAGGAAAGAATTGGTTGTAAGTGACATTGATAAGCTATCGATATCAAATGTTAGTCCCGAATCCATAAGGTTTTTTGTTCATATAGGATTGGAGTATTTGTTCACTCTGTGGATTTGTTTCATGCTTTACAAAGAATATGACAATGTTGCACAAATGAGAATGAATTTCTTGGCAGCTCAACGCAGACGTGCCGAGCAATTCACCGTGTTGGTTAGGAACGTGCCGCATGTTTCTGGTCGCTCGACCTCGGATACTGTCGATCAGTTCTTTCATAAAAATCATCCCGAACATTATCTTTCTCATCAGGCCATATATAATGCCAACAAGTTTGCTAAGCTAGCAAAAAAAAGAGCAAGGCTCCAGAATTGGTTGGACTACAATCTACTTAAGTTTGAAAGACATCCCGACAAGAGACCGACTAGAAAGGTAGGATGCTTCGGACTTTGCGGTAGCAGAGTCGATTCTATCGAATACTACAAACAACAAATTAGGGATCTCGATGCTAGAATGGCATTGGAGAGACAGAAAGTTATCAAAGATTCAAAAGAAATATTACCAGTTGCTTTCGTTTCGTTTAATACTCGTTGGGGCGCTGCAGTTTGTGCACAGACTCAACAGAGTAAGAATCCCACGTTATGGCTGTCGAATTGGGCTCCGGAACCTCGTGATGTTTACTGGAAGAACCTTGCGATACCATTTGTTTCTCTAAGCATCAGAAAACTAGTCATATCCTTGTCGGTTTTCGCTCTCGTGTTCTTCTACATGATACCAATTGCTTTCGTACAATCACTAGCCAATCTGGAAGGTCTCGAACGAGTTGCTCCGTTCCTAAGGCCAGTGATAGAATTGAAGTTTGTCAAGTCATTTTTACAGGGTTTCCTTCCTGGTTTGGCTCTCAAAATCTTTCTATATATACTTCCAACAGTTCTAATGATCATGTCGAAAATTGAGGGACATGTAGCGGTTTCGATGCTCGAACGAAGGGCCGCGGCTAAGTACTATTATTTCATGCTGGTGAATGTGTTCTTGGGAAGTATTGTGACTGGTACAGCTTTTGAGCAACTGGATTCCTTCATTCACCAATCTCCTACCCAAATTCCCCGAACGATTGGAGTTTCCATACCAATGAAGGCTACGTTCTTCATTACCTACATAATGGTTGACGGGTGGGCTGGAATAGCGAGCGAGATTCTTCGGTTGAAACCGCTGGTCATCTTTCATCTCAAGAATCTGTTCATAGTGAAAACTGATAGAGATAGAGAGAAGGCAATGGACCCAGGAAGTGTCGAATTCCCCGAAACTTTACCGAGCTTACAACTGTACTTCCTACTGGGAATTGTTTATGCCGTGGTCACCCCGATTCTTCTCCCGTTTATACTCGTCTTCTTCGCATTTGCATACTTGGTTTACCGCCATCAGATCATCAATGTATATAATCAGCAATATGAAAGTGTTGGTGCCTTCTGGCCCCATGTCCACAGCCGCATCATAGCAAGCTTGTTGATATCTCAACTACTTCTATTGGGTTTGCTCAGTACAAAAAAGGCTGCCAATTCAACTCCGCTGCTTGTCGCCTTACCGATATTGACGTTGTTCTTCCACAAGTACTGCAAGAACCGGTTCGAACCCGCGTTTCGTAAATACCCTCTCGAGGTAAAGTCTACTTTAAATCTAGTTGCTGAAAAGGATCTTAACCGACATGAAGCGATGGATAGAGATACACTAGAGAAGAGCACGGAACCCGACATGAACGTAAAAGCATTCTTAGCGGACGCATACTTGCATCCCATTTTCAGGTCTTTTGAGGAAGAAGAGTTAGCAGAGGTTAAGGTAGAGAAACAAAAATCACCAGTTCATGATGACAGTTCAGTGAGTGAACTGAGCTCTCCTTCACCACCACACAGAGTGGATGAACTTCATCATACTGAGTCCCCACCTCATTATATTTATCATCCGCAGTCCCCTACTCATTTTAATATATTATAA 2385 42.39 MATLGDIGVSALINIITAFVFLLAFALLRIQPINDRVYFPKWYIDGGRNSPRGSRNFVGKYVNLNILTYLTFLNWMPAALKMSEAEIISHAGFDSAVFLRIYTLGLKIFFPIAIVALVVLIPVNVSSGTLFFLRKELVVSDIDKLSISNVSPESIRFFVHIGLEYLFTLWICFMLYKEYDNVAQMRMNFLAAQRRRAEQFTVLVRNVPHVSGRSTSDTVDQFFHKNHPEHYLSHQAIYNANKFAKLAKKRARLQNWLDYNLLKFERHPDKRPTRKVGCFGLCGSRVDSIEYYKQQIRDLDARMALERQKVIKDSKEILPVAFVSFNTRWGAAVCAQTQQSKNPTLWLSNWAPEPRDVYWKNLAIPFVSLSIRKLVISLSVFALVFFYMIPIAFVQSLANLEGLERVAPFLRPVIELKFVKSFLQGFLPGLALKIFLYILPTVLMIMSKIEGHVAVSMLERRAAAKYYYFMLVNVFLGSIVTGTAFEQLDSFIHQSPTQIPRTIGVSIPMKATFFITYIMVDGWAGIASEILRLKPLVIFHLKNLFIVKTDRDREKAMDPGSVEFPETLPSLQLYFLLGIVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNQQYESVGAFWPHVHSRIIASLLISQLLLLGLLSTKKAANSTPLLVALPILTLFFHKYCKNRFEPAFRKYPLEVKSTLNLVAEKDLNRHEAMDRDTLEKSTEPDMNVKAFLADAYLHPIFRSFEEEELAEVKVEKQKSPVHDDSSVSELSSPSPPHRVDELHHTESPPHYIYHPQSPTHFNIL 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3085733 3090484 + CmoCh06G006210.1 Cmo06g00621 384183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00621 794 Pfam Cytosolic domain of 10TM putative phosphate transporter 199 361 IPR027815 -
Cmo06g00621 794 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 764 IPR045122 GO:0005227
Cmo06g00621 794 MobiDBLite consensus disorder prediction 744 794 - -
Cmo06g00621 794 Pfam Late exocytosis, associated with Golgi transport 7 178 IPR032880 -
Cmo06g00621 794 Pfam Calcium-dependent channel, 7TM region, putative phosphate 372 644 IPR003864 GO:0016020
Cmo06g00621 794 PANTHER TO DEHYDRATION PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 764 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00621 K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel - csv:101207845 1372.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00621 Cmo16g01249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00621 Cmo-Chr6:3085733 Cmo20g00641 Cmo-Chr20:3148755 0 dispersed
Cmo04g01761 Cmo-Chr4:8883461 Cmo06g00621 Cmo-Chr6:3085733 2.86E-138 transposed
Cmo16g01249 Cmo-Chr16:8911800 Cmo06g00621 Cmo-Chr6:3085733 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g784 . . Bda06g01235 . . Bpe07g00244 Bma07g01005 . Cmo06g00621 Cmo16g01249 . . . . . Cpe14g00994 . . . . . . . . Cla10g00118 Cam10g0115 Cec10g0124 Cco10g0124 Clacu10g0121 Cmu10g0968 Cre10g0378 . . . . Lsi07g01149 . . Cme06g02425 . . . . . . . Bma12g00247 . . . Cma06g00614 Cma16g01202 Car06g00547 Car16g01132 . . . . . . . . . . . . . . . . . Csa03g00119 Chy06g02185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008449 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00621 Cmo_Chr06 FPKM 4.810164 5.339391 9.781021 10.467191 12.087735 10.757414 13.45605 17.253201 18.989891 17.113134